Table 3. Genome Statistics
From: Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 1,543,805 | 100.00% |
DNA Coding region (bp) | 1,396,223 | 90.44% |
DNA G+C content (bp) | 705,312 | 45.69% |
Number of replicons | 1 | |
Extrachromosomal elements | 0 | |
Total genes | 1419 | 100.00% |
RNA genes | 49 | 3.52% |
rRNA operons | 1 | |
Protein-coding genes | 1369 | 96.48% |
Pseudo genes | 16 | 1.13% |
Genes with function prediction | 1059 | 74.63% |
Genes in paralog clusters | 69 | 4.86% |
Genes assigned to COGs | 1096 | 77.24% |
Genes assigned Pfam domains | 1084 | 76.39% |
Genes with signal peptides | 240 | 16.91% |
Genes with transmembrane helices | 339 | 23.89% |
CRISPR repeats | 0 |