Table 3. Genome Statistics
From: Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 5,965,593 | 100.00% |
DNA coding region (bp) | 5,364,872 | 89.93% |
DNA G+C content (bp) | 4,112,466 | 68.94% |
Number of replicons | 1 | |
Extrachromosomal elements | 0 | |
Total genes | 5,784 | 100.00% |
RNA genes | 57 | 0.99% |
rRNA operons | 3 | |
tRNA genes | 47 | 0.81% |
Protein-coding genes | 5,727 | 99.01% |
Pseudo genes | 149 | 2.58% |
Genes with function prediction (proteins) | 4,341 | 75.05% |
Genes in paralog clusters | 3,491 | 60.36% |
Genes assigned to COGs | 4,261 | 73.67% |
Genes assigned Pfam domains | 4,426 | 76.52% |
Genes with signal peptides | 1,159 | 20.04% |
Genes with transmembrane helices | 1,256 | 21.72% |
CRISPR repeats | 1 |