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Table 1. Classification and general features of S. marina XMU15T according to the MIGS recommendations [27].

From: Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15T)

MIGS ID

Property

Term

Evidence code

 

Current classification

Domain Bacteria

TAS [28]

 

Phylum Actinobacteria

TAS [29]

 

Class Actinobacteria

TAS [30]

 

Subclass Actinobacteridae

TAS [30,31]

 

Order Actinomycetales

TAS [3033]

 

Suborder Pseudonocardineae

TAS [30,31,34]

 

Family Pseudonocardiaceae

TAS [30,31,3436]

 

Genus Saccharomonospora

TAS [32,37]

 

Species Saccharomonospora marina

TAS [1]

 

Type-strain XMU15

TAS [1]

 

Gram stain

positive

TAS [1]

 

Cell shape

variable, substrate and aerial mycelia

TAS [1]

 

Motility

non-motile

TAS [1]

 

Sporulation

smooth or wrinkled spores, singly, in pairs or in short chains from aerial mycelium

TAS [1]

 

Temperature range

mesophile

TAS [1]

 

Optimum temperature

28–37°C

TAS [1]

 

Salinity

optimum 0–3% (w/v) NaCl, tolerated up to 5%

TAS [1]

MIGS-22

Oxygen requirement

aerobic

TAS [1]

 

Carbon source

D-glucose, manose, melibiose, L-rhamnose, myo-inositol

TAS [1]

 

Energy metabolism

chemoheterotrophic

NAS

MIGS-6

Habitat

marine, ocean sediment

TAS [1]

MIGS-15

Biotic relationship

free living

TAS [1]

MIGS-14

Pathogenicity

none

NAS

 

Biosafety level

1

NAS

MIGS-23.1

Isolation

ocean sediment

TAS [1]

MIGS-4

Geographic location

Zhaoan Bay, East China Sea

TAS [1]

MIGS-5

Sample collection time

December 2005

NAS

MIGS-4.1

Latitude

24.108

TAS [1]

MIGS-4.2

Longitude

117.294

TAS [1]

MIGS-4.3

Depth

4 m

TAS [1]

MIGS-4.4

Altitude

−4 m

TAS [1]

  1. Evidence codes - IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project. If the evidence code is IDA, then the property was directly observed for a living isolate by one of the authors or an expert mentioned in the acknowledgements [38].