Table 3. Genome Statistics
From: Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 4,763,852 | 100.00% |
DNA coding region (bp) | 4,287,642 | 90.00% |
DNA G+C content (bp) | 3,331,901 | 70.08% |
Number of replicons | 1 | |
Extrachromosomal elements | 0 | |
Total genes | 4,530 | 100.00% |
RNA genes | 58 | 1.28% |
rRNA operons | 3 | |
tRNA genes | 47 | 1.04% |
Protein-coding genes | 4,472 | 98.72% |
Pseudo genes | 96 | 2.12% |
Genes with function prediction (proteins) | 3,342 | 73.77% |
Genes in paralog clusters | 2,354 | 51.96% |
Genes assigned to COGs | 3,312 | 73.11% |
Genes assigned Pfam domains | 3,450 | 76.16% |
Genes with signal peptides | 1,332 | 29.40% |
Genes with transmembrane helices | 1,070 | 23.62% |
CRISPR repeats | 0 |