TY - CHAP AU - Rossello-Mora, R. ED - Stackebrandt, E. PY - 2006 DA - 2006// TI - DNA-DNA Reassociation Methods Applied to Microbial Taxonomy and Their Critical Evaluation BT - Molecular Identification, Systematics, and population Structure of Prokaryotes PB - Springer CY - Berlin UR - https://doi.org/10.1007/978-3-540-31292-5_2 DO - 10.1007/978-3-540-31292-5_2 ID - Rossello-Mora2006 ER - TY - JOUR AU - Stackebrandt, E. AU - Ebers, J. PY - 2006 DA - 2006// TI - Taxonomic parameters revisited: tarnished gold standards JO - Microbiol Today VL - 33 ID - Stackebrandt2006 ER - TY - JOUR AU - Welker, M. AU - Moore, E. R. PY - 2011 DA - 2011// TI - Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology JO - Syst Appl Microbiol VL - 34 UR - https://doi.org/10.1016/j.syapm.2010.11.013 DO - 10.1016/j.syapm.2010.11.013 ID - Welker2011 ER - TY - JOUR AU - Tindall, B. J. AU - Rosselló-Móra, R. AU - Busse, H. J. AU - Ludwig, W. AU - Kämpfer, P. PY - 2010 DA - 2010// TI - Notes on the characterization of prokaryote strains for taxonomic purposes JO - Int J Syst Evol Microbiol VL - 60 UR - https://doi.org/10.1099/ijs.0.016949-0 DO - 10.1099/ijs.0.016949-0 ID - Tindall2010 ER - TY - JOUR AU - Rautio, M. AU - Eerola, E. AU - Väisänen-Tunkelrott, M. L. AU - Molitoris, D. AU - Lawson, P. AU - Collins, M. D. AU - Jousimies-Somer, H. PY - 2003 DA - 2003// TI - Reclassification of (Weinberg et al., 1937) in a New Genus gen. Nov., as comb. Nov., and Description of sp. Nov., from Human Sources JO - Syst Appl Microbiol VL - 26 UR - https://doi.org/10.1078/072320203322346029 DO - 10.1078/072320203322346029 ID - Rautio2003 ER - TY - JOUR AU - Tyrrell, K. L. AU - Warren, Y. A. AU - Citron, D. M. AU - Goldstein, E. J. C. PY - 2011 DA - 2011// TI - Re-assessment of phenotypic identifications of Bacteroides putredinis to Alistipes species using molecular methods JO - Anaerobe VL - 17 UR - https://doi.org/10.1016/j.anaerobe.2011.04.002 DO - 10.1016/j.anaerobe.2011.04.002 ID - Tyrrell2011 ER - TY - JOUR AU - Nagai, F. AU - Morotomi, M. AU - Watanabe, Y. AU - Sakon, H. AU - Tanaka, R. PY - 2010 DA - 2010// TI - Alistipes indistinctus sp. nov. and Odoribacter laneus sp. nov., common members of the human intestinal microbiota isolated from faeces JO - Int J Syst Evol Microbiol VL - 60 UR - https://doi.org/10.1099/ijs.0.014571-0 DO - 10.1099/ijs.0.014571-0 ID - Nagai2010 ER - TY - JOUR AU - Song, Y. AU - Könönen, E. AU - Rautio, M. AU - Liu, C. AU - Bryk, A. AU - Eerola, E. AU - Finegold, S. M. PY - 2006 DA - 2006// TI - Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin JO - Int J Syst Evol Microbiol VL - 56 UR - https://doi.org/10.1099/ijs.0.64318-0 DO - 10.1099/ijs.0.64318-0 ID - Song2006 ER - TY - JOUR AU - Brook, I. PY - 2002 DA - 2002// TI - Clinical review: bacteremia caused by anaerobic bacteria in children JO - Crit Care VL - 6 UR - https://doi.org/10.1186/cc1490 DO - 10.1186/cc1490 ID - Brook2002 ER - TY - JOUR AU - Rautio, M. AU - Saxen, H. AU - Siitonen, A. AU - Nikku, R. AU - Jousimies-Somer, H. PY - 2000 DA - 2000// TI - Bacteriology of histopathologically defined appendicitis in children JO - Pediatr Infect Dis J VL - 19 UR - https://doi.org/10.1097/00006454-200011000-00010 DO - 10.1097/00006454-200011000-00010 ID - Rautio2000 ER - TY - JOUR AU - Woese, C. R. AU - Kandler, O. AU - Wheelis, M. L. PY - 1990 DA - 1990// TI - Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eukarya JO - Proc Natl Acad Sci USA VL - 87 UR - https://doi.org/10.1073/pnas.87.12.4576 DO - 10.1073/pnas.87.12.4576 ID - Woese1990 ER - TY - STD TI - Editor L. Validation List No. 143. Int J Syst Evol Microbiol 2012; 62:1–4. ID - ref12 ER - TY - CHAP AU - Krieg, N. R. AU - Ludwig, W. AU - Euzéby, J. AU - Whitman, W. B. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - Ludwig, W. ED - Whitman, W. B. PY - 2011 DA - 2011// TI - Phylum XIV. Bacteroidetes phyl. nov. BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York ID - Krieg2011 ER - TY - CHAP AU - Krieg, N. R. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - Ludwig, W. ED - Whitman, W. B. PY - 2011 DA - 2011// TI - Class I. Bacteroidia class. nov. BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York ID - Krieg2011 ER - TY - CHAP AU - Krieg, N. R. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - Ludwig, W. ED - Whitman, W. B. PY - 2011 DA - 2011// TI - Order I. Bacteroidales ord. nov. BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York ID - Krieg2011 ER - TY - CHAP AU - Krieg, N. R. AU - Staley, J. T. AU - Brown, D. R. AU - Hedlund, B. P. AU - Paster, B. J. AU - Ward, N. L. AU - Ludwig, W. AU - Whitman, W. B. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - Ludwig, W. ED - Whitman, W. B. PY - 2011 DA - 2011// TI - Family III. Rikenellaceae fam. nov. BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York ID - Krieg2011 ER - TY - CHAP AU - Krieg, N. R. AU - Staley, J. T. AU - Brown, D. R. AU - Hedlund, B. P. AU - Paster, B. J. AU - Ward, N. L. AU - Ludwig, W. AU - Whitman, W. B. ED - Krieg, N. R. ED - Staley, J. T. ED - Brown, D. R. ED - Hedlund, B. P. ED - Paster, B. J. ED - Ward, N. L. ED - Ludwig, W. ED - Whitman, W. B. PY - 2011 DA - 2011// TI - Family III. Rikenellaceae fam. nov. BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York ID - Krieg2011 ER - TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. AU - Davis, A. P. AU - Dolinski, K. AU - Dwight, S. S. AU - Eppig, J. T. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Stackebrandt, E. AU - Ebers, J. PY - 2006 DA - 2006// TI - Taxonomic parameters revisited: tarnished gold standards JO - Microbiol Today VL - 33 ID - Stackebrandt2006 ER - TY - JOUR AU - Seng, P. AU - Drancourt, M. AU - Gouriet, F. AU - La, S. B. AU - Fournier, P. E. AU - Rolain, J. M. AU - Raoult, D. PY - 2009 DA - 2009// TI - Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry JO - Clin Infect Dis VL - 49 UR - https://doi.org/10.1086/600885 DO - 10.1086/600885 ID - Seng2009 ER - TY - STD TI - Prokaryotic Dynamic Programming Genefinding Algorithm. http://prodigal.ornl.gov UR - http://prodigal.ornl.gov ID - ref21 ER - TY - JOUR AU - Benson, D. A. AU - Karsch-Mizrachi, I. AU - Clark, K. AU - Lipman, D. J. AU - Ostell, J. AU - Sayers, E. W. PY - 2012 DA - 2012// TI - Gen Bank JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1202 DO - 10.1093/nar/gkr1202 ID - Benson2012 ER - TY - JOUR AU - Lowe, T. M. AU - Eddy, S. R. PY - 1997 DA - 1997// TI - t-RNAscan-SE: a program for imroved detection of transfer RNA gene in genomic sequence JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.5.0955 DO - 10.1093/nar/25.5.0955 ID - Lowe1997 ER - TY - JOUR AU - Lagesen, K. AU - Hallin, P. AU - Rodland, E. A. AU - Staerfeldt, H. H. AU - Rognes, T. AU - Ussery, D. W. PY - 2007 DA - 2007// TI - RNAmmer: consistent and rapid annotation of ribosomal RNA genes JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm160 DO - 10.1093/nar/gkm160 ID - Lagesen2007 ER - TY - CHAP AU - Garrity, G. M. AU - Holt, J. G. ED - Garrity, G. M. ED - Boone, D. R. ED - Castenholz, R. W. PY - 2001 DA - 2001// TI - The Road Map to the Manual BT - Bergey’s Manual of Systematic Bacteriology PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-21609-6_15 DO - 10.1007/978-0-387-21609-6_15 ID - Garrity2001 ER - TY - STD TI - Ludwig W, Euzeby J, Whitman WG. Draft taxonomic outline of the Bacteroidetes, Planctomycetes, Chlamydiae, Spirochaetes, Fibrobacteres, Fusobacteria, Acidobacteria, Verrucomicrobia, Dictyoglomi, and Gemmatimonadetes. http://www.bergeys.org/outlines/Bergeys_Vol_4_Outline.pdf.Taxonomic Outline 2008. UR - http://www.bergeys.org/ ID - ref26 ER - TY - CHAP AU - Garrity, G. M. AU - Holt, J. ED - Garrity, G. M. ED - Boone, D. R. ED - Castenholz, R. W. PY - 2001 DA - 2001// TI - Taxonomic outline of the Archaea and Bacteria BT - Bergey’s Manual of Systematic Bacteriology PB - Springer-Verlag CY - New York ID - Garrity2001 ER - TY - STD TI - Editor L. Validation List no. 94. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Int J Syst Evol Microbiol 2003; 53:1701–1702. PubMed http://dx.doi.org/10.1099/ijs.0.03001-0 UR - http://dx.doi.org/ ID - ref28 ER -