Table 4. Number of genes associated with the 25 general COG functional categories
From: Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9
Code | Value | %agea | Description |
|---|---|---|---|
J | 201 | 4.27 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.02 | RNA processing and modification |
K | 481 | 10.22 | Transcription |
L | 160 | 3.40 | DNA replication, recombination and repair |
B | 1 | 0.02 | Chromatin structure and dynamics |
D | 37 | 0.79 | Cell division and chromosome partitioning |
Y | 0 | 0.00 | Nuclear structure |
V | 64 | 1.36 | Defense mechanisms |
T | 187 | 3.97 | Signal transduction mechanisms |
M | 265 | 5.63 | Cell envelope biogenesis, Outer membrane |
N | 94 | 2.00 | Cell motility and secretion |
Z | 0 | 0.00 | Cytoskeleton |
W | 0 | 0.00 | Extracellular structure |
U | 116 | 2.47 | Intracellular trafficking and secretion |
O | 153 | 3.25 | Posttranslational modification, protein turnover, chaperones |
C | 272 | 5.78 | Energy production and conversion |
G | 424 | 9.01 | Carbohydrate transport and metabolism |
E | 470 | 9.99 | Amino acid transport and metabolism |
F | 106 | 2.25 | Nucleotide transport and metabolism |
H | 185 | 3.93 | Coenzyme metabolism |
I | 135 | 2.87 | Lipid metabolism |
P | 285 | 6.06 | Inorganic ion transport and metabolism |
Q | 133 | 2.83 | Secondary metabolites biosynthesis, transport and catabolism |
R | 537 | 11.41 | General function prediction only |
S | 398 | 8.46 | Function unknown |
- | 917 | 17.85 | Not in COG |