Table 4. Number of genes associated with the 25 general COG functional categories.
Code | Value | %age | Description |
|---|---|---|---|
J | 185 | 4.8 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.03 | RNA processing and modification |
K | 327 | 8.48 | Transcription |
L | 181 | 4.69 | Replication, recombination and repair |
B | 3 | 0.08 | Chromatin structure and dynamics |
D | 39 | 1.01 | Cell cycle control, cell division and chromosome partitioning |
Y | 0 | 0 | Nuclear structure |
V | 28 | 0.73 | Defense mechanisms |
T | 311 | 8.07 | Signal transduction mechanisms |
M | 187 | 4.85 | Cell wall/membrane/envelope biogenesis |
N | 129 | 3.35 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 97 | 2.52 | Intracellular trafficking, secretion and vesicular transport |
O | 135 | 3.5 | Post-translational modification, protein turnover, chaperones |
C | 192 | 4.98 | Energy production and conversion |
G | 215 | 5.58 | Carbohydrate transport and metabolism |
E | 401 | 10.4 | Amino acid transport and metabolism |
F | 81 | 2.1 | Nucleotide transport and metabolism |
H | 165 | 4.28 | Coenzyme transport and metabolism |
I | 117 | 3.03 | Lipid transport and metabolism |
P | 187 | 4.85 | Inorganic ion transport and metabolism |
Q | 132 | 3.42 | Secondary metabolites biosynthesis, transport and catabolism |
R | 425 | 11.02 | General function prediction only |
S | 318 | 8.25 | Function unknown |
- | 918 | 21.22 | Not in COGs |