Table 4. Nucleotide content and gene count levels of the genome
From: Complete genome sequence of Halopiger xanaduensis type strain (SH-6T)
Attribute | Value | % of totala |
|---|---|---|
Genome size (bp) | 4,355,268 | 100.0% |
DNA Coding region (bp) | 3,724,648 | 85.5% |
DNA G+C content (bp) | 2,838,921 | 65.2% |
Total genes | 4,370 | Â |
RNA genes | 60 | Â |
rRNA operons | 3 | Â |
Protein-coding genes | 4,310 | 100.0% |
Pseudogenes | 89 | 2.1% |
Genes with function prediction | 2,560 | 58.6% |
Genes in paralog clusters | 469 | 10.9% |
Genes assigned to COGs | 2,877 | 66.8% |
Genes assigned Pfam domains | 2,735 | 63.5% |
Genes with signal peptides | 529 | 12.3% |
Genes with transmembrane helices | 1,023 | 23.7% |
CRISPR repeats | 0 | Â |