Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)
Code | value | %age | Description |
|---|---|---|---|
J | 173 | 4.0 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 338 | 7.8 | Transcription |
L | 216 | 5.0 | Replication, recombination and repair |
B | 1 | 0.2 | Chromatin structure and dynamics |
D | 36 | 0.8 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 126 | 2.9 | Defense mechanisms |
T | 272 | 6.3 | Signal transduction mechanisms |
M | 372 | 8.6 | Cell wall/membrane/envelope biogenesis |
N | 14 | 0.3 | Cell motility |
Z | 1 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 73 | 1.7 | Intracellular trafficking, secretion, and vesicular transport |
O | 132 | 3.1 | Posttranslational modification, protein turnover, chaperones |
C | 204 | 4.7 | Energy production and conversion |
G | 351 | 8.1 | Carbohydrate transport and metabolism |
E | 304 | 7.0 | Amino acid transport and metabolism |
F | 86 | 2.0 | Nucleotide transport and metabolism |
H | 161 | 3.7 | Coenzyme transport and metabolism |
I | 158 | 3.7 | Lipid transport and metabolism |
P | 226 | 5.2 | Inorganic ion transport and metabolism |
Q | 99 | 2.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 620 | 14.3 | General function prediction only |
S | 372 | 8.6 | Function unknown |
- | 2,113 | 35.1 | Not in COGs |