Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Halogeometricum borinquense type strain (PR3T)
Code | Value | % age | Description |
|---|---|---|---|
J | 162 | 4.1 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 140 | 3.6 | Transcription |
L | 138 | 3.5 | Replication, recombination and repair |
B | 3 | 0.0 | Chromatin structure and dynamics |
D | 0 | 0.1 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 46 | 1.2 | Defense mechanisms |
T | 113 | 2.8 | Signal transduction mechanisms |
M | 87 | 2.2 | Cell wall/membrane biogenesis |
N | 38 | 0.1 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 27 | 0.7 | Intracellular trafficking and secretion |
O | 123 | 3.1 | Posttranslational modification, protein turnover, chaperones |
C | 174 | 4.4 | Energy production and conversion |
G | 124 | 3.1 | Carbohydrate transport and metabolism |
E | 271 | 6.9 | Amino acid transport and metabolism |
F | 77 | 1.9 | Nucleotide transport and metabolism |
H | 140 | 3.5 | Coenzyme transport and metabolism |
I | 98 | 2.5 | Lipid transport and metabolism |
P | 178 | 4.5 | Inorganic ion transport and metabolism |
Q | 60 | 1.5 | Secondary metabolites biosynthesis, transport and catabolism |
R | 433 | 11.0 | General function prediction only |
S | 227 | 5.8 | Function unknown |
- | 1488 | 37.8 | Not in COGs |