Table 4. Number of genes associated with the general COG functional categories
From: Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10T)
Code | value | %age | Description |
|---|---|---|---|
J | 145 | 7.0 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.1 | RNA processing and modification |
K | 84 | 4.0 | Transcription |
L | 205 | 9.8 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 21 | 1.0 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 26 | 1.3 | Defense mechanisms |
T | 115 | 5.5 | Signal transduction mechanisms |
M | 135 | 6.5 | Cell wall/membrane/envelope biogenesis |
N | 36 | 1.7 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 62 | 3.0 | Intracellular trafficking, secretion, and vesicular transport |
O | 81 | 3.9 | Posttranslational modification, protein turnover, chaperones |
C | 174 | 8.3 | Energy production and conversion |
G | 66 | 3.2 | Carbohydrate transport and metabolism |
E | 198 | 9.5 | Amino acid transport and metabolism |
F | 52 | 2.5 | Nucleotide transport and metabolism |
H | 115 | 5.5 | Coenzyme transport and metabolism |
I | 60 | 2.9 | Lipid transport and metabolism |
P | 86 | 4.1 | Inorganic ion transport and metabolism |
Q | 32 | 1.5 | Secondary metabolites biosynthesis, transport and catabolism |
R | 246 | 11.8 | General function prediction only |
S | 145 | 7.0 | Function unknown |
- | 475 | 19.8 | Not in COGs |