Table 4. Number of genes associated with the general COG functional categories in P. lavamentivorans DS-1^T

J

163

5.07

Translation, ribosomal structure and biogenesis

A

1

0.0

RNA processing and modification

K

243

7.0

Transcription

L

137

3.9

Replication, recombination and repair

B

1

0.0

Chromatin structure and dynamics

D

25

0.7

Cell cycle control, mitosis and meiosis

Y

0

0.0

Nuclear structure

Z

0

0

Cytoskeleton

W

0

0

Extracellular structures

V

85

2.4

Defense mechanisms

T

118

3.4

Signal transduction mechanisms

M

131

3.8

Cell wall/membrane biogenesis

N

6

0.2

Cell motility

U

39

1.1

Intracellular trafficking and secretion

O

77

2.2

Posttranslational modification, protein turnover, chaperones

C

153

4.4

Energy production and conversion

G

294

8.4

Carbohydrate transport and metabolism

E

214

6.1

Amino acid transport and metabolism

F

79

2.3

Nucleotide transport and metabolism

H

110

3.2

Coenzyme transport and metabolism

I

73

2.1

Lipid transport and metabolism

P

152

4.4

Inorganic ion transport and metabolism

Q

30

0.9

Secondary metabolites biosynthesis, transport and catabolism

R

318

9.1

General function prediction only

S

200

5.7

Function unknown

-

1082

31.0

Not in COGs