Skip to main content

Advertisement

Table 3. Nucleotide and gene count levels of the genome of P. lavamentivorans DS-1T

From: Complete genome sequence of Parvibaculum lavamentivorans type strain (DS-1T)

Attribute Value % of totala
Genome size (bp) 3,914,745 100
DNA coding region (bp) 3,535,064 90.30
G+C content (bp) 2,439,986 62.33
Number of replicons 1  
Extrachromosomal elements 0  
Total genes 3,714 100
RNA genes 60 1.62
rRNA operons 1  
Protein-coding genes 3,654 98.38
Pseudo genes 18 0.48
Genes with function prediction 2,723 73.32
Genes in paralog clusters 620 16.69
Genes assigned to COGs 2,904 78.19
Genes assigned to Pfam domains 3,054 82.23
Genes with signal peptides 717 19.31
Genes connected to KEGG pathways 1,085 29.21
Genes with transporter classification 430 11.58
Genes with transmembrane helices 782 21.06
CRISPR count 1 % of totala
  1. a) The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.