Table 4. Number of genes associated with the 21 general COG functional categories
From: Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)
Code | Value | % | Description |
|---|---|---|---|
J | 154 | 3.6 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 281 | 6.5 | Transcription |
L | 113 | 2.6 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 19 | 0.4 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 59 | 1.4 | Defense mechanisms |
T | 222 | 5.2 | Signal transduction mechanisms |
M | 265 | 6.1 | Cell wall/membrane biogenesis |
N | 13 | 0.3 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 48 | 1.1 | Intracellular trafficking and secretion |
O | 116 | 2.7 | Posttranslational modification, protein turnover, chaperones |
C | 140 | 3.3 | Energy production and conversion |
G | 292 | 6.7 | Carbohydrate transport and metabolism |
E | 209 | 4.9 | Amino acid transport and metabolism |
F | 65 | 1.5 | Nucleotide transport and metabolism |
H | 136 | 3.1 | Coenzyme transport and metabolism |
I | 104 | 2.4 | Lipid transport and metabolism |
P | 234 | 5.4 | Inorganic ion transport and metabolism |
Q | 58 | 1.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 373 | 8.7 | General function prediction only |
S | 229 | 5.3 | Function unknown |
- | 1481 | 34.5 | Not in COGs |