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Table 1. Classification and general features of P. heparinus HIM 762-3T based on MIGS recommendations [17]

From: Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)

MIGS ID

Property

Term

Evidence code

 

Current classification

Domain Bacteria

 
 

Phylum Bacteroidetes

 
 

Class Sphingobacteria

TAS [18]

 

Order Sphingobacteriales

TAS [18]

 

Family Sphingobacteriaceae

TAS [4]

 

Genus Pedobacter

TAS [1]

 

Species Pedobacter heparinus

TAS [1]

 

Type strain HIM 762-3

 
 

Gram stain

negative

TAS [4]

 

Cell shape

rod-shaped

TAS [4]

 

Motility

probably gliding, non-flagellated

TAS [4]

 

Sporulation

non-sporulating

TAS [4]

 

Temperature range

mesophile, 10–35°C

TAS [2]

 

Optimum temperature

25–30°C for growth

TAS [2]

 

Salinity

0–3% NaCl

TAS [2]

MIGS-22

Oxygen requirement

aerobe

TAS [1,2]

 

Carbon source

carbohydrates, glycosaminoglycans

TAS [1,4]

 

Energy source

chemoorganotroph

TAS [1,2,4]

MIGS-6

Habitat

soil

TAS [1]

MIGS-15

Biotic relationship

free living

NAS

MIGS-14

Pathogenicity

none

NAS

 

Biosafety level

1

TAS [19]

 

Isolation

not reported

 

MIGS-4

Geographic location

not reported

 

MIGS-5

Sample collection time

before 1956

NAS

MIGS-4.1

Latitude - Longitude

not reported

 

MIGS-4.2

 

MIGS-4.3

Depth

not reported

 

MIGS-4.4

Altitude

not reported

 
  1. Evidence codes - IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [20]. If the evidence code is IDA, then the property was directly observed for a live isolate by one of the authors or an expert mentioned in the acknowledgements.