Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Hirschia baltica type strain (IFAM 1418T)
Code | value | %age | Description |
|---|---|---|---|
J | 158 | 5.9 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 167 | 6.2 | Transcription |
L | 106 | 3.9 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 28 | 1.0 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 34 | 1.3 | Defense mechanisms |
T | 140 | 5.2 | Signal transduction mechanisms |
M | 196 | 7.3 | Cell wall/membrane biogenesis |
N | 70 | 2.6 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 92 | 3.4 | Intracellular trafficking and secretion, and vesicular transport |
O | 129 | 4.8 | Posttranslational modification, protein turnover, chaperones |
C | 152 | 5.7 | Energy production and conversion |
G | 141 | 5.2 | Carbohydrate transport and metabolism |
E | 204 | 7.6 | Amino acid transport and metabolism |
F | 55 | 2.1 | Nucleotide transport and metabolism |
H | 119 | 4.4 | Coenzyme transport and metabolism |
I | 133 | 5.0 | Lipid transport and metabolism |
P | 152 | 5.7 | Inorganic ion transport and metabolism |
Q | 82 | 3.1 | Secondary metabolites biosynthesis, transport and catabolism |
R | 287 | 10.7 | General function prediction only |
S | 243 | 9.0 | Function unknown |
- | 823 | 25.2 | Not in COGs |