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Table 4. Number of genes associated with the 25 general COG functional categories

From: Draft genome sequence of Caminibacter mediatlanticus strain TB-2T, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent

Code

Value

%agea

Description

J

130

7.12

Translation

K

53

2.9

Transcription

L

84

4.6

Replication, recombination and repair

D

21

1.15

Cell cycle control, mitosis and meiosis

V

14

0.77

Defense mechanisms

T

79

4.33

Signal transduction mechanisms

M

108

5.91

Cell wall/membrane biogenesis

N

58

3.18

Cell motility

U

52

2.85

Intracellular trafficking and secretion

O

73

4

Posttranslational modification, protein turnover, chaperones

C

116

6.35

Energy production and conversion

G

50

2.74

Carbohydrate transport and metabolism

E

128

7.01

Amino acid transport and metabolism

F

52

2.85

Nucleotide transport and metabolism

H

87

4.76

Coenzyme transport and metabolism

I

34

1.86

Lipid transport and metabolism

P

66

3.61

Inorganic ion transport and metabolism

Q

14

0.77

Secondary metabolites biosynthesis, transport and catabolism

R

153

8.38

General function prediction only

S

89

4.87

Function unknown

-

365

19.99

Not in COGs

  1. a) The total is based on the total number of protein coding genes in the annotated genome.