Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Treponema succinifaciens type strain (6091T)
Code | value | %age | Description |
|---|---|---|---|
J | 142 | 7.8 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 120 | 6.6 | Transcription |
L | 179 | 9.8 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 24 | 1.3 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 46 | 2.5 | Defense mechanisms |
T | 103 | 5.7 | Signal transduction mechanisms |
M | 120 | 6.6 | Cell wall/membrane/envelope biogenesis |
N | 63 | 3.5 | Cell motility |
Z | 1 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 61 | 3.3 | Intracellular trafficking, secretion, and vesicular transport |
O | 55 | 3.0 | Posttranslational modification, protein turnover, chaperones |
C | 74 | 4.1 | Energy production and conversion |
G | 111 | 6.1 | Carbohydrate transport and metabolism |
E | 128 | 7.0 | Amino acid transport and metabolism |
F | 62 | 3.4 | Nucleotide transport and metabolism |
H | 58 | 3.2 | Coenzyme transport and metabolism |
I | 34 | 1.9 | Lipid transport and metabolism |
P | 60 | 3.3 | Inorganic ion transport and metabolism |
Q | 5 | 0.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 240 | 13.2 | General function prediction only |
S | 138 | 7.6 | Function unknown |
- | 1,112 | 39.9 | Not in COGs |