Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Cellulophaga lytica type strain (LIM-21T)
Code | value | %age | Description |
|---|---|---|---|
J | 154 | 6.7 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 181 | 7.9 | Transcription |
L | 107 | 4.7 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 18 | 0.8 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 41 | 1.8 | Defense mechanisms |
T | 125 | 5.5 | Signal transduction mechanisms |
M | 193 | 8.4 | Cell wall/membrane/envelope biogenesis |
N | 4 | 0.2 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 30 | 1.3 | Intracellular trafficking, secretion, and vesicular transport |
O | 99 | 4.3 | Posttranslational modification, protein turnover, chaperones |
C | 122 | 5.3 | Energy production and conversion |
G | 122 | 5.3 | Carbohydrate transport and metabolism |
E | 194 | 8.5 | Amino acid transport and metabolism |
F | 59 | 2.6 | Nucleotide transport and metabolism |
H | 121 | 5.3 | Coenzyme transport and metabolism |
I | 79 | 3.5 | Lipid transport and metabolism |
P | 159 | 6.9 | Inorganic ion transport and metabolism |
Q | 29 | 1.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 276 | 12.1 | General function prediction only |
S | 177 | 7.7 | Function unknown |
- | 1,260 | 37.5 | Not in COGs |