Table 5. VMGAP to METAREP mapping
| Â | Â | METAREP input file | VGMAP |
|---|---|---|---|
Column | Field ID | Description | Description |
1 | peptide_ID | Unique peptide ID | Unique peptide ID |
2 | Library_ID | Library ID | Library ID |
3 | com_name | Functional description (s) | Common Names(s) |
4 | com_name_src | Source of functional description assignment | aNRdb BLAST + bFRAGHMM + PFAM +TIGRFAM + PRIAM + CDD +ACLAME |
5 | go_id | Gene Ontology ID (s) | Gene Ontology ID (s) |
6 | go_src | Source of Gene Ontology assignment | PFAM + TIGRFAM + ACLAME +Com2GO |
7 | ec_id | Enzyme Commission ID (s) | Enzyme Commission ID (s) |
8 | ec_src | Source of Enzyme Commission ID | TIGRFAM + PFAM + PRIAM |
9 | hmm_id | Hidden Markov Model hits | ACLAME, PFAM, TIGRFAM |
10 | blast_taxon | NCBI taxonomy ID | Best Blast Hit NRdb |
11 | blast_evalue | BLAST E-Value | Best Blast Hit NRdb |
12 | blast_pid | BLAST percent Identity | Best Blast Hit NRdb |
13 | blast_cov | BLAST sequence coverage of shortest sequence | Best Blast Hit NRdb |
14 | filter | Any filter tag (categorical variable) | N/A |