Pipeline job name | Program | Parameters |
---|---|---|
A CLAME_HMM | hmmpfam | E 0.001 |
A CLAME_PEP | Blastp | b 50 -e 1e-5 |
ALLGROUP_PEP | Blastp | b 50 -e 1e-5 |
CDD_RPS | Rpsblast | b 50 -e 1e-3 |
ENV_NR | blastp | b 50 -e 1e-3 |
ENV_NT | tblastn | b 50 -e 1e-3 |
FRAG_HMM | hmmpfam | E 0.001 |
PEPSTATS | Pepstats | None |
PFAM/TIGRFAM_HMM | Hmmpfam | E 0.001 |
PRIAM | Priam | e 1e-10 |
SANGER_PEP | Blastp | b 50 -e 1e-5 |
SIGNALP | Signalp | tgram- -trunc 70 |
TMHMM | tmhmm | None |