Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Isosphaera pallida type strain (IS1BT)
Code | value | %age | Description |
|---|---|---|---|
J | 138 | 4.7 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 166 | 5.7 | Transcription |
L | 165 | 5.7 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 24 | 0.8 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 54 | 1.9 | Defense mechanisms |
T | 187 | 6.5 | Signal transduction mechanisms |
M | 196 | 6.8 | Cell wall/membrane/envelope biogenesis |
N | 77 | 2.7 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 128 | 4.4 | Intracellular trafficking and secretion, and vesicular transport |
O | 132 | 4.5 | Posttranslational modification, protein turnover, chaperones |
C | 157 | 5.4 | Energy production and conversion |
G | 176 | 6.1 | Carbohydrate transport and metabolism |
E | 197 | 6.8 | Amino acid transport and metabolism |
F | 57 | 2.0 | Nucleotide transport and metabolism |
H | 152 | 5.3 | Coenzyme transport and metabolism |
I | 83 | 2.9 | Lipid transport and metabolism |
P | 110 | 3.8 | Inorganic ion transport and metabolism |
Q | 70 | 2.4 | Secondary metabolites biosynthesis, transport and catabolism |
R | 435 | 15.0 | General function prediction only |
S | 190 | 6.6 | Function unknown |
- | 1,415 | 37.0 | Not in COGs |