Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6T)
Code | value | %age | Description |
|---|---|---|---|
J | 134 | 8.6 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 52 | 3.3 | Transcription |
L | 85 | 5.4 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 19 | 1.3 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 21 | 1.3 | Defense mechanisms |
T | 53 | 3.4 | Signal transduction mechanisms |
M | 128 | 8.2 | Cell wall/membrane/envelope biogenesis |
N | 23 | 1.5 | Cell motility |
Z | 1 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 56 | 3.6 | Intracellular trafficking and secretion, and vesicular transport |
O | 74 | 4.7 | Posttranslational modification, protein turnover, chaperones |
C | 182 | 11.6 | Energy production and conversion |
G | 58 | 3.7 | Carbohydrate transport and metabolism |
E | 118 | 7.5 | Amino acid transport and metabolism |
F | 52 | 3.3 | Nucleotide transport and metabolism |
H | 107 | 6.8 | Coenzyme transport and metabolism |
I | 43 | 2.7 | Lipid transport and metabolism |
P | 78 | 5.0 | Inorganic ion transport and metabolism |
Q | 15 | 1.0 | Secondary metabolites biosynthesis, transport and catabolism |
R | 167 | 10.7 | General function prediction only |
S | 100 | 6.4 | Function unknown |
- | 507 | 26.3 | Not in COGs |