Figure 1.
From: Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse
Phylogenetic tree based on 16S rRNA highlighting the position of C. jejuni 327 relative to the other type and non-type strains within the species Campylobacter jejuni. Strains shown are those within Campylobacter jejuni having corresponding NCBI genome project IDs listed below. The strains and their corresponding GenBank accession numbers (and, when applicable, draft sequence coordinates) for 16S rRNA genes are (type=T): C. jejuni subsp. jejuni NCTC 11168T, AL11168; C. jejuni subsp. jejuni M1, CP001900; C. jejuni subsp. jejuni 81116, CP000814; C. jejuni subsp. jejuni 260.94, AANK01000000; C. jejuni subsp. jejuni HB93-13, AANQ01000000; C. jejuni subsp. jejuni 1336, ADGL01000000; C. jejuni subsp. jejuni 327, ADHM00000000; C. jejuni subsp. jejuni 81–176, CP000538; C. jejuni subsp. jejuni 414, ADGM01000000; C. jejuni subsp. jejuni IA3902, CP001876; C. jejuni subsp. doylei 269.97, CP000768; C. coli JV20, AEER01000000; C. jejuni subsp. jejuni BH-01-0142, ABKD01000000; C. jejuni subsp. jejuni CF93-6, AANJ01000000; C. jejuni subsp. jejuni RM1221, CP000025; C. jejuni subsp. jejuni 84-25, AANT02000000; C. jejuni subsp. jejuni 305, ADHL00000000; C. coli RM2228, AAFL01000000; C. jejuni subsp. jejuni DFVF1099, ADHK00000000; C. lari RM2100, CP000932; C. upsaliensis RM3195, AAFJ01000000; C. fetus subsp. fetus 82-40, CP000487; C. fetus subsp. venerealis str. Azul-94, ACLG01000000; C. concisus 13826, CP000792; C. curvus 52592, CP000767; C. hominis ATCC. BAA-381, CP000776; C. gracilis RM3268, ACYG01000000; C. rectus RM3267, ACFU01000000; C. showae RM3277, ACVQ01000000; Campylobacterales bacterium GD 1, ABXD01000000; E. coli str K-12 substr MG1655, U00096. The tree uses sequences aligned by PRANK [23–25], which by default uses the Hasegawa, Kishino and Yano (HKY) model with empirical base frequencies and kappa=2. The tree is built with MEGA4 [26] using Neighbor-Joining method and 1000 re-samplings to calculate bootstrap values. C. jejuni 327 is found in the C jejuni subsp. jejuni cluster that has a 100% bootstrap value along with the C. coli species. E. coli K-12 was used as an outgroup.