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Table 1. Classification and general features of D. baculatum XT in accordance to the MIGS recommendations [28]

From: Complete genome sequence of Desulfomicrobium baculatum type strain (XT)

MIGS ID

Property

Term

Evidence code

 

Current classification

Domain Bacteria

 
 

Phylum Proteoobacteria

 
 

Class Deltaproteobacteria

TAS [29]

 

Order Desulfovibrionales

TAS [29]

 

Family Desulfomicrobiaceae

TAS [29]

 

Genus Desulfomicrobium

TAS [1]

 

Species Desulfomicrobium baculatum

TAS [1]

 

Type strain X

TAS [1]

 

Gram stain

negative

TAS [1]

 

Cell shape

rod-shaped

TAS [1]

 

Motility

motile, single polar flagellum

TAS [1]

 

Sporulation

non-sporulating

TAS [1]

 

Temperature range

mesophilic

TAS [1]

 

Optimum temperature

28–37°C

TAS [1]

 

Salinity

10 g NaCl/I

TAS [1]

MIGS-22

Oxygen requirement

strictly anerobic

TAS [1]

 

Carbon source

lactate, pyruvate, malate, fumarate

TAS [1,8]

 

Energy source

formate, H2

TAS [1]

MIGS-6

Habitat

freshwater to brackish anoxic sediments

TAS [1]

MIGS-15

Biotic relationship

free-living

NAS

MIGS-14

Pathogenicity

none

NAS

 

Biosafety level

1

TAS [30]

 

Isolation

water-saturated manganese carbonate ore

TAS [1]

MIGS-4

Geographic location

not reported

 

MIGS-5

Sample collection time

1975 or earlier

IDA

MIGS-4.1

Latitude - Longitude

not reported

 

MIGS-4.2

 

MIGS-4.3

Depth

not reported

 

MIGS-4.4

Altitude

not reported

 
  1. Evidence codes - IDA: Inferred from Direct Assay (first time in publication); TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [31]. If the evidence code is IDA, then the property was directly observed for a live isolate by one of the authors or an expert mentioned in the acknowledgements.