Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)
Code | value | %age | Description |
|---|---|---|---|
J | 160 | 5.4 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 230 | 7.8 | Transcription |
L | 181 | 6.1 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 38 | 1.3 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 46 | 1.6 | Defense mechanisms |
T | 131 | 4.4 | Signal transduction mechanisms |
M | 155 | 5.2 | Cell wall/membrane/envelope biogenesis |
N | 2 | 0.1 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 34 | 1.2 | Intracellular trafficking and secretion, and vesicular transport |
O | 98 | 3.3 | Posttranslational modification, protein turnover, chaperones |
C | 223 | 7.5 | Energy production and conversion |
G | 199 | 6.7 | Carbohydrate transport and metabolism |
E | 305 | 10.3 | Amino acid transport and metabolism |
F | 79 | 2.7 | Nucleotide transport and metabolism |
H | 141 | 4.8 | Coenzyme transport and metabolism |
I | 151 | 5.1 | Lipid transport and metabolism |
P | 132 | 4.5 | Inorganic ion transport and metabolism |
Q | 89 | 3.0 | Secondary metabolites biosynthesis, transport and catabolism |
R | 358 | 12.1 | General function prediction only |
S | 212 | 7.2 | Function unknown |
- | 1,036 | 27.9 | Not in COGs |