Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)
Code | value | %age | Description |
|---|---|---|---|
J | 144 | 7.4 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 113 | 5.8 | Transcription |
L | 123 | 6.3 | Replication, recombination and repair |
B | 4 | 0.2 | Chromatin structure and dynamics |
D | 32 | 1.6 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 33 | 1.7 | Defense mechanisms |
T | 107 | 5.5 | Signal transduction mechanisms |
M | 96 | 4.9 | Cell wall/membrane/envelope biogenesis |
N | 81 | 4.1 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 66 | 3.4 | Intracellular trafficking and secretion, and vesicular transport |
O | 74 | 3.8 | Posttranslational modification, protein turnover, chaperones |
C | 144 | 7.4 | Energy production and conversion |
G | 67 | 3.4 | Carbohydrate transport and metabolism |
E | 144 | 7.4 | Amino acid transport and metabolism |
F | 58 | 3.0 | Nucleotide transport and metabolism |
H | 112 | 5.7 | Coenzyme transport and metabolism |
I | 98 | 5.0 | Lipid transport and metabolism |
P | 70 | 3.6 | Inorganic ion transport and metabolism |
Q | 26 | 1.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 205 | 10.5 | General function prediction only |
S | 158 | 8.1 | Function unknown |
- | 673 | 27.6 | Not in COGs |