Table 2. Genome sequencing project information
From: Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)
MIGS ID | Property | Term |
|---|---|---|
MIGS-31 | Finishing quality | Finished |
MIGS-28 | Libraries used | Three genomic libraries: 454 pyrosequence standard library and; paired end library (10.2 kb insert size); Illumina standard library |
MIGS-29 | Sequencing platforms | 454 GS FLX Titanium, Illumina GAii |
MIGS-31.2 | Sequencing coverage | 103.3 Ă— pyrosequence, 81.3 Ă— Illumina |
MIGS-30 | Assemblers | Newbler version 2.1-PreRelease-4-28-2009, Velvet, phrap |
MIGS-32 | Gene calling method | Prodigal 1.4, GenePRIMP |
| Â | INSDC ID | CP002048 |
| Â | Genbank Date of Release | June 7, 2010 |
| Â | GOLD ID | Gc012392 |
| Â | NCBI project ID | 37873 |
| Â | Database: IMG-GEBA | 2502957035 |
MIGS-13 | Source material identifier | DSM 12680 |
| Â | Project relevance | Tree of Life, GEBA |