From: The IGS Standard Operating Procedure for Automated Prokaryotic Annotation
Evidence | Criterion | Query | Match | Rank |
---|---|---|---|---|
HMM | Equivalog | N/A | N/A | 1 |
BER | Trusted | Full | Full | 2 |
HMM | Equivalog Domain | Full | Full | 3 |
BER | Trusted | Partial | Full | 4 |
HMM | Subfamily | N/A | N/A | 5 |
HMM | Superfamily | N/A | N/A | 6 |
HMM | Subfamily Domain | N/A | N/A | 7 |
HMM | Domain | Partial | Full | 8 |
HMM | Pfam | Full | Full | 9 |
BER | Trusted | Full | Partial | 10 |
TMHMM | > 5 membrane spans | N/A | N/A | 11 |
LipoP | Presence of prediction | N/A | N/A | 12 |
HMM | Hypothetical Equivalog | N/A | N/A | 13 |
BER | Not trusted | Full | Full | 14 |
BER | Not trusted | Partial | Full | 15 |
BER | Not trusted | Full | Partial | 16 |
BER | With ambiguous term | Full/Partial | Full/Partial | 17 |