Table 1. BER annotation hierarchy
From: The IGS Standard Operating Procedure for Automated Prokaryotic Annotation
Trusted | Query % Cov. | Match % Cov. | Rank | Name Modifier | GO Terms/TIGR roles |
|---|---|---|---|---|---|
Yes | Full | Full | 1 | None | copied from match |
Yes | Full | Partial | 2 | … domain protein | GO root terms/TIGR unknown |
Yes | Partial | Full | 2 | … domain protein | copied from match |
No | Full | Full | 3 | possible … | copied from match |
No | Partial | Full | 4 | possible…domain protein | GO root/TIGR unknown |
No | Full | Partial | 4 | possible…domain protein | GO root/TIGR unknown |
with ambiguous term | Full/Partial | Full/Partial | 5 | “conserved hypothetical protein” | GO root/TIGR conserved hypothetical |