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Table 8. Number of transcripts associated with the general SEED functional categories

From: Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel

Subsystem Hierarchy 1 Jan 3:30pm Jan 7pm April 4pm April 10pm Aug 27 4pm Aug 27 10pm Aug 28 4am
Amino Acids and Derivatives 261 536 204 198 21 144 443
Carbohydrates 886 1767 546 1302 530 1381 1256
Cell Division and Cell Cycle 83 191 52 63 96 56 80
Cell Wall and Capsule 154 353 317 297 153 113 221
Clustering-based subsystems 641 657 294 451 111 157 427
Cofactors, Vitamins, Prosthetic Groups, Pigments 215 457 130 248 24 13 469
DNA Metabolism 102 108 83 122 24 26 85
Fatty Acids and Lipids 84 28 17 27 0 28 10
Macromolecular Synthesis 0 0 5 2 2 0 0
Membrane Transport 44 19 237 83 2673 13 440
Metabolism of Aromatic Compounds 47 6 16 4 0 24 14
Miscellaneous 53 80 54 55 672 43 75
Motility and Chemotaxis 40 10 438 58 3 8 180
Nitrogen Metabolism 11 0 0 2 9 8 3
Nucleosides and Nucleotides 144 87 42 48 4 13 56
Phosphorus Metabolism 79 83 64 94 25 18 31
Photosynthesis 67 0 17 2 0 1 0
Potassium metabolism 29 13 3 13 4 2 7
Protein Metabolism 439 95 129 625 81 112 172
RNA Metabolism 1631 160 1813 702 907 2883 874
Regulation and Cell signaling 65 136 16 354 30 18 41
Respiration 174 20 26 97 125 31 109
Secondary Metabolism 18 3 1 0 0 0 1
Stress Response 100 175 42 229 5 43 56
Sulfur Metabolism 42 18 19 14 13 11 40
Unclassified 346 58 957 101 10 110 271
Virulence 152 847 385 716 385 651 546