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Table 4. Number of genes associated with the general COG functional categories

From: Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)

Code

Value

%age

Description

J

159

4.3

Translation, ribosomal structure and biogenesis

A

0

0.0

RNA processing and modification

K

328

8.8

Transcription

L

129

3.5

Replication, recombination and repair

B

1

0.0

Chromatin structure and dynamics

D

25

0.7

Cell cycle control, cell division, chromosome partitioning

Y

0

0.0

Nuclear structure

V

58

1.6

Defense mechanisms

T

321

8.6

Signal transduction mechanisms

M

183

4.9

Cell wall/membrane/envelope biogenesis

N

94

2.5

Cell motility

Z

0

0.0

Cytoskeleton

W

0

0.0

Extracellular structures

U

58

1.6

Intracellular trafficking and secretion, and vesicular transport

O

114

3.1

Posttranslational modification, protein turnover, chaperones

C

223

6.0

Energy production and conversion

G

553

14.9

Carbohydrate transport and metabolism

E

326

8.8

Amino acid transport and metabolism

F

96

2.6

Nucleotide transport and metabolism

H

130

3.5

Coenzyme transport and metabolism

I

61

1.6

Lipid transport and metabolism

P

165

4.4

Inorganic ion transport and metabolism

Q

30

0.8

Secondary metabolites biosynthesis, transport and catabolism

R

450

12.1

General function prediction only

S

212

5.7

Function unknown

-

1,045

23.9

Not in COGs