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Table 4. Number of genes associated with the general COG functional categories

From: Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)

Code Value %age Description
J 159 4.3 Translation, ribosomal structure and biogenesis
A 0 0.0 RNA processing and modification
K 328 8.8 Transcription
L 129 3.5 Replication, recombination and repair
B 1 0.0 Chromatin structure and dynamics
D 25 0.7 Cell cycle control, cell division, chromosome partitioning
Y 0 0.0 Nuclear structure
V 58 1.6 Defense mechanisms
T 321 8.6 Signal transduction mechanisms
M 183 4.9 Cell wall/membrane/envelope biogenesis
N 94 2.5 Cell motility
Z 0 0.0 Cytoskeleton
W 0 0.0 Extracellular structures
U 58 1.6 Intracellular trafficking and secretion, and vesicular transport
O 114 3.1 Posttranslational modification, protein turnover, chaperones
C 223 6.0 Energy production and conversion
G 553 14.9 Carbohydrate transport and metabolism
E 326 8.8 Amino acid transport and metabolism
F 96 2.6 Nucleotide transport and metabolism
H 130 3.5 Coenzyme transport and metabolism
I 61 1.6 Lipid transport and metabolism
P 165 4.4 Inorganic ion transport and metabolism
Q 30 0.8 Secondary metabolites biosynthesis, transport and catabolism
R 450 12.1 General function prediction only
S 212 5.7 Function unknown
- 1,045 23.9 Not in COGs