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Table 4. Number of genes associated with the general COG functional categories

From: Complete genome sequence of Candidatus Ruthia magnifica

Code

Value

%age

Description

J

137

13.50

Translation, ribosomal structure and biogenesis

A

1

0.10

RNA processing and modification

K

32

3.15

Transcription

L

61

6.01

Replication, recombination and repair

B

0

0.0

Chromatin structure and dynamics

D

13

1.28

Cell cycle control, mitosis and meiosis

Y

0

0.0

Nuclear structure

V

9

0.89

Defense mechanisms

T

17

1.67

Signal transduction mechanisms

M

73

7.19

Cell wall/membrane biogenesis

N

0

0.0

Cell motility

Z

0

0.0

Cytoskeleton

W

0

0.0

Extracellular structures

U

24

2.36

Intracellular trafficking and secretion

O

74

7.29

Posttranslational modification, protein turnover, chaperones

C

90

8.87

Energy production and conversion

G

31

3.05

Carbohydrate transport and metabolism

E

99

9.75

Amino acid transport and metabolism

F

39

3.84

Nucleotide transport and metabolism

H

94

9.26

Coenzyme transport and metabolism

I

36

3.55

Lipid transport and metabolism

P

45

4.43

Inorganic ion transport and metabolism

Q

11

1.08

Secondary metabolites biosynthesis, transport and catabolism

R

77

7.59

General function prediction only

S

52

5.12

Functions unknown

-

186

16.64

Not in COGs

  1. a) The total is based on the total number of protein coding genes in the annotated genome.