Table 6. A list of genes discussed, reflecting the physiological insights into the organism
From: Complete genome sequence of Acidaminococcus fermentans type strain (VR4T)
Enzymes | Locus | Gene annotation |
|---|---|---|
From the glutamate fermentation pathway | ||
Acfer_1756 | Glutamate dehydrogenase | |
Acfer_1818 | glutaconate CoA-transferase β subunit | |
Acfer_1819 | glutaconate CoA-transferase α subunit | |
Acfer_1814 | 2-hydroxyglutaryl-CoA dehydratase (subunit β) | |
Acfer_1815 | 2-hydroxyglutaryl-CoA dehydratase (subunit α) | |
Acfer_1816 | 2-hydroxyglutaryl-CoA dehydratase activator protein | |
Acfer_1817 | glutaconyl-CoA decarboxylase subunit α | |
Acfer_1834 | glutaconyl-CoA decarboxylase subunit β | |
Acfer_1835 | glutaconyl-CoA decarboxylase subunit r | |
Acfer_1836 | glutaconyl-CoA decarboxylase sodium pump, subunit r | |
Acfer_1477 | acyl-CoA dehydrogenase domain protein | |
Acfer_1575 | acyl-CoA dehydrogenase domain protein | |
Acfer_1583 | acyl-CoA dehydrogenase domain protein | |
Enzymes of β-lactamase and the related | ||
Acfer_0250 | β-lactamase domain-containing protein | |
Acfer_0522 | Zn-dependent hydrolase of the β-lactamase fold | |
Acfer_0551 | RNA-metabolizing metallo-β-lactamase | |
Acfer_0879 | β-lactamase class A-like | |
Acfer_1020 | RNA-metabolizing metallo-β-lactamase | |
Acfer_1231 | β-lactamase domain protein | |
Acfer_1515 | β-lactamase domain-containing protein | |
Acfer_1556 | β-lactamase class A-like | |
Acfer_1591 | β-lactamase class C | |
From fermentation of trans-aconitate viacitrate, oxaloacetate and pyruvate | ||
Acfer_0075 | pyruvate flavodoxin/ferredoxin oxidoreductase domain protein | |
Acfer_0096 | aconitate hydratase domain protein | |
Acfer_0097 | citrate transporter | |
Acfer_0406 | citrate transporter | |
Acfer_0407 | citrate transporter | |
Acfer_0408 | citrate lyase, α subunit | |
Acfer_0409 | citrate lyase, β subunit | |
Acfer_0410 | citrate lyase acyl carrier protein, r subunit | |
Acfer_0489 | pyruvate ferredoxin/flavodoxin oxidoreductase | |
Acfer_0606 | isocitrate dehydrogenase, NADP-dependent | |
Acfer_0630 | dicarboxylate carrier MatC domain protein | |
Acfer_0631 | aconitate hydratase domain protein | |
Acfer_1070 | citrate transporter | |
Acfer_1362 | oxaloacetate decarboxylase; pyruvate carboxyltransferase | |
Acfer_1968 | isocitrate/isopropylmalate dehydrogenase | |
Acfer_1969 | dicarboxylate carrier MatC domain protein | |
Acfer_1971 | aconitate hydratase | |
Acfer_1973 | aconitate hydratase domain protein | |