Table 1 Antimicrobial resistance genes found in the unbinned-assembled reads (from heavy and light fractions) and MAG-1

Butirosin

Aminoglycoside

X

X

aph(3’)-IIc (85.46% / AM743169)

aph(3’)-IIc (85.46% / AM743169)

Paromomycin

X

X

Kanamycin

X

X

Neomycin

X

X

Chloramphenicol

Amphenicol

X

X

OqxB (76.28% / EU370913)

OqxB (76.28% / EU370913)

Benzylkonium chloride

Quaternary ammonium compound

X

X

Cetylpyridinium chloride

Quaternary ammonium compound

X

X

Ciprofloxacin

Quinolone

X

X

Nalidixic acid

Quinolone

X

X

Trimethoprim

Folate pathway antagonist

X

X

X

dfrB3 (90.14% / X72585)

OqxB (76.28% / EU370913)

OqxB (76.28% / EU370913)

Unknown beta-lactam

Beta-lactam

X

X

blaTEM-181 (99.86% / KM977568)

blaL1 (85.84% / EF126059)