rRNA gene target | Primer pair sequences | Publications that use it. (Declared drawbacks/biases/modifications) |
---|---|---|
V1-V2 | 27F/338R | [183] (1) |
V1-V3 | 27F: 5′-AGAGTTTGATYMTGGCTCAG-3′ 533R: 5′-TTACCGCGGCTGCTGGC-3′ | [39] |
V3-V4 | 314F: 5′-CCTACGGGNGGCWGCAG-3′ 805R: 5′-GACTACHVGGGTATCTAATCC-3′ | |
V3-V4 | 338F: 5′-ACTCCTACGGGAGGCAGCA-3 806R: 5′-GGACTACHVGGGTWTCTAAT-3′ | |
V3-V4 | 341F: 5′-CCTAYGGGRBGCASCAG-3′ 806R: 5′-GGACTACNNGGGTATCTAAT-3′ 341F: 5′-CCTACGGGAGGCAGCAG-3′ 806R: 5′-GGACTACHVGGGTWTCTAAT-3′ | |
V3-V4 | 341F: 5′-CCTAYGGGRBGCASCAG-3′ Uni806R:5′-GGACTACNNGGGTATCTAAT-3′ | [204] (4) |
V3-V4 | S-D-Bact-0341-b-S-17: 5′-CCTACGGGNGGCWGCAG-3′ S-D-Bact-0785-a-A-21: 5′-GACTACHVGGGTATCTAATCC-3′ | |
V3-V5 | 341F/907R: | [156] (1) |
V3-V5 | 479F: 5′-CAGCMGCYGCNGTAANAC-3′ 888R: 5′-CCGYCAATTCMTTTRAGT-3′ | [130] |
V4 | 515F: 5 ‘-GTGYCAGCMGCCGCGGTAA-3′ 806R:5′-GGACTACNVGGGTWTCTAAT-3′ | [142] (1) [68], (1) [14], (1) [101], (1) [143], (1) [36], (1) [57], (1) [54, 155, 170, 184, 194], (1) [85], (1) |
V4-V5 | 518F/926R | |
V4-V6 | 518F: 5′-CCAGCAGCYGCGGTAAN-3′ 1046R: 5′-CGACRRCCATGCANCACCT-3′ | [124] |
V5-V6 | 784F: 5′-RGGATTAGATACCC 1064R: 5′-CGACRRCCATGCANCACCT | [178] |
V5-V7 | 799F2: 5´-AACMGGATTAGATACCCGG-3´ 1193R: 5′-ACGCATCCCCACCTTCCTC-3′ 799F: 5′-AACMGGATTAGATACCCKG-3′ 1193(2)R: 5′ACGTCATCCCCACCTTCC-3′ | [30] (5), (6) [23], (7) [2, 78, 169], (1) [47, 158, 190], (1) [22, 25, 50, 81, 159], (1) [16, 40, 69, 186, 201], (1) [202], (1) [87, 126, 146], (1) [51, 52], |
V5-V8 | 799F: 5′-AACMGGATTAGATACCCKG-3′ 1392R: 5′-ACGGGCGGTGTGTRC-3′ | [19] |
V5-V8 | 803F: 5′-ATTAGATACCCTGGTAGTC-3′ 1392wR: 5′-ACGGGCGGTGWGTRC-3′ | |
V5-V8 | 804F: 5′-ATTAGATACCCDRGTAGT-3′ 926F: 5′-AAACTYAAAKGAATTGACGG-3′′ 1392R: 5′-ACGGGCGGTGTGRC-3′ | [115] |
V6-V8 | 1114F: 5′-GCAACGAGCGCAACCC-3′ 1392R: 5′-ACGGGCGGTGTGRC-3′ | [115] |
V8 | 1114F-1392R | [101] (1) |