Skip to main content
Fig. 5 | Environmental Microbiome

Fig. 5

From: Glycyrrhiza uralensis Fisch. Root-associated microbiota: the multifaceted hubs associated with environmental factors, growth status and accumulation of secondary metabolites

Fig. 5

The sample similarity of transcriptomics in accordance with the G. uralensis root-associated microbiota. a The transcriptomics difference was performed between different group to figure out the influences of growth condition and growth year to the G. uralensis. FPKM (Fragments Per Kilobase of exon model per Million mapped fragments) table was the input table for difference analysis. And Euclidean method was used to calculate the sample similarity. At the bottom of each axis is the corresponding data distribution of different group. The red imaginary line in a distinguish the wild samples and cultivation samples well. Procrustes Analysis here was applied to correlation study of the G. uralensis root-associated microbiota and root transcriptomics. The dataset of microbial relative abundance table at genus level and the FPKM table were the input dataset for Procrustes Analysis. The scatter plots represent a significant agreement between the rhizosphere microbiota and transcriptomics (b), between soil microbiota and transcriptomics (c)

Back to article page

Environmental Microbiome

ISSN: 2524-6372