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Table 2 Genetic features detected in the binned genomes from the Mt Isa mine tailings

From: Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings

  Features Rubrobacter xylanophilus Truepera radiovictrix Thioalkalivibrio sp. Acidimicrobium ferrooxidans Rhodomicrobium vannielii Desulfuromonas acetoxidans Thiobacillus denitrificans Erythrobacter litoralis
Carbon metabolism cbb        
cox       
pca        
sal        
cat       
FAHF      
bph       
malE      
Sulfur metabolism sox        
Blr3520         
dsr        
Nitrogen metabolism nos         
nor         
nar     
nir     
nap         
nas        
nrf         
NaT      
NiT      
nif         
urt         
Metal resistance czc  
cus      
cop
pco
mer      
ACR3      
ars    
Iron acquisition pit     
SDP      
efu        
Oxidative stress GT      
Glo  
SAM         
Fr
NO        
SOD  
Osmotic stress mdo      
bet    
opu       
SOX         
pro    
Mobility msh         
flg/fli      
mre    
che        
  1. Notes: cbb RuBisCo genes for carbon fixation, cox carbon monoxide dehydrogenase genes, pca Protocatechuate pathway for aromatic compound catabolism, sal Salicylate pathway for aromatic compound catabolism, cat Catechol pathway for aromatic compound catabolism, FAHF Gentisate pathway for aromatic compound catabolism, bph Biphenyl pathway for aromatic compound catabolism, malE Maltose ABC transporter for polysaccharides metabolism, sox Sulfur oxidation genes, Blr3520 Conserved hypothetical genes for sulfur oxidation, dsr dissimilatory sulfite reductase genes, nos Nitrous oxide reductase genes, nor Nitric oxide reductase genes, nar Respiratory nitrate reductase genes, nir Nitrite reductase genes, nap periplasmic nitrate reductase genes, nas assimilatory nitrate reductase genes, nrf Cytochrome c nitrite reductase genes, NaT Nitrate ABC transporter genes, NiT Nitrite ABC transporter genes, urt Urea ABC transporter, czc Cobalt-zinc-cadmium resistance genes, cus Cation efflux genes, cop Copper resistance genes, pco Copper multicopper resistance genes, mer Mercury resistance genes, ACR3 Arsenic resistance genes, ars Arsenic resistance genes, pit Ferric ion transporter genes, SDP High affinity iron transporter siderophore genes, efu Ferrous ion transporter genes, GT Glutathione S-transferase genes for oxidative resistance, Glo Methylglyoxal detoxification genes, SAM SAM-dependent mehtyltransferase genes, Fr Ferroxidase genes, NO Oxidative stress response genes, SOD Superoxide dismutase genes, mdo Glucans biosynthesis genes, bet Choline pathway for osmotic stress response, opu Choline transporter genes, SOX Sarcpsome oxidase genes, pro L-proline glycine betaine transporter genes, msh mannose-sensitive haemagglutinin (MSHA)-like pilus genes for cell attachment, flg/fli flagellar genes, mre rod-shape determining genes, che chemotaxi genes