Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings

Li, Wenjun; Li, Xiaofang

doi:10.1186/s40793-021-00380-3

Environmental Microbiome

Table 2 Genetic features detected in the binned genomes from the Mt Isa mine tailings

From: Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings

	Features	Rubrobacter xylanophilus	Truepera radiovictrix	Thioalkalivibrio sp.	Acidimicrobium ferrooxidans	Rhodomicrobium vannielii	Desulfuromonas acetoxidans	Thiobacillus denitrificans	Erythrobacter litoralis
Carbon metabolism	cbb	√		√		√		√
	cox	√			√	√
	pca	√
	sal	√				√
	cat	√							√
	FAHF	√			√	√			√
	bph	√		√	√
	malE	√	√	√
Sulfur metabolism	sox			√	√			√
	Blr3520			√				√
	dsr			√	√			√
Nitrogen metabolism	nos			√				√
	nor			√				√
	nar	√		√	√			√	√
	nir	√	√	√					√
	nap
	nas	√		√		√		√
	nrf
	NaT			√	√	√			√
	NiT	√				√		√	√
	nif				√
	urt			√
Metal resistance	czc	√	√	√	√	√		√	√
	cus		√	√		√		√	√
	cop	√	√	√	√	√	√	√	√
	pco	√	√	√	√	√	√	√	√
	mer	√		√	√	√		√
	ACR3	√		√		√		√	√
	ars	√	√	√		√		√	√
Iron acquisition	pit	√		√	√	√			√
	SDP	√	√	√
	efu	√
Oxidative stress	GT	√		√		√		√	√
	Glo	√	√	√	√	√		√	√
	SAM			√		√
	Fr	√	√	√	√	√	√	√	√
	NO			√		√			√
	SOD	√	√	√		√	√	√	√
Osmotic stress	mdo		√	√				√	√
	bet	√	√	√	√				√
	opu	√	√
	SOX		√			√
	pro	√	√	√	√				√
Mobility	msh			√				√
	flg/fli	√		√	√	√		√
	mre	√	√	√	√	√
	che		√	√		√		√

Notes: cbb RuBisCo genes for carbon fixation, cox carbon monoxide dehydrogenase genes, pca Protocatechuate pathway for aromatic compound catabolism, sal Salicylate pathway for aromatic compound catabolism, cat Catechol pathway for aromatic compound catabolism, FAHF Gentisate pathway for aromatic compound catabolism, bph Biphenyl pathway for aromatic compound catabolism, malE Maltose ABC transporter for polysaccharides metabolism, sox Sulfur oxidation genes, Blr3520 Conserved hypothetical genes for sulfur oxidation, dsr dissimilatory sulfite reductase genes, nos Nitrous oxide reductase genes, nor Nitric oxide reductase genes, nar Respiratory nitrate reductase genes, nir Nitrite reductase genes, nap periplasmic nitrate reductase genes, nas assimilatory nitrate reductase genes, nrf Cytochrome c nitrite reductase genes, NaT Nitrate ABC transporter genes, NiT Nitrite ABC transporter genes, urt Urea ABC transporter, czc Cobalt-zinc-cadmium resistance genes, cus Cation efflux genes, cop Copper resistance genes, pco Copper multicopper resistance genes, mer Mercury resistance genes, ACR3 Arsenic resistance genes, ars Arsenic resistance genes, pit Ferric ion transporter genes, SDP High affinity iron transporter siderophore genes, efu Ferrous ion transporter genes, GT Glutathione S-transferase genes for oxidative resistance, Glo Methylglyoxal detoxification genes, SAM SAM-dependent mehtyltransferase genes, Fr Ferroxidase genes, NO Oxidative stress response genes, SOD Superoxide dismutase genes, mdo Glucans biosynthesis genes, bet Choline pathway for osmotic stress response, opu Choline transporter genes, SOX Sarcpsome oxidase genes, pro L-proline glycine betaine transporter genes, msh mannose-sensitive haemagglutinin (MSHA)-like pilus genes for cell attachment, flg/fli flagellar genes, mre rod-shape determining genes, che chemotaxi genes

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ISSN: 2524-6372

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