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Table 4 Subset of Jonction-specific differentially expressed genes of Pseudomonas veronii wild-type during 1 h transition

From: Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils

Locus_tag

log2 FCa

Gene

Gene function

PVE_r1g0226

2.84

 

tail protein

PVE_r1g0616

211

psiF

Phosphate starvation-inducible protein PsiF

PVE_r1g0858

2.46

clpB

chaperone protein ClpB

PVE_r1g1263

2.17

 

tail protein

PVE_r1g1264

2.36

 

phage tail protein

PVE_r1g1271

2.36

 

pyocin R, lytic enzyme

PVE_r1g1633

2.23

 

universal stress protein A

PVE_r1g2181

2.10

 

RND transporter

PVE_r1g2307

3.59

 

multidrug RND transporter

PVE_r1g2308

3.57

 

multidrug transporter

PVE_r1g2309

2.29

emrB

multidrug export protein EmrB

PVE_r1g2514

2.34

nirG

Protein NirG

PVE_r1g2515

2.12

nirL

Protein NirL

PVE_r1g2516

2.05

nirD

Protein NirD

PVE_r1g2551

2.75

moaA1

cyclic pyranopterin monophosphate synthase 1

PVE_r1g2614

2.96

moaB

molybdenum cofactor biosynthesis protein B

PVE_r1g2615

2.41

moaA

molybdenum cofactor biosynthesis protein A

PVE_r1g2895

2.65

 

Transposase for insertion sequence element IS1328

PVE_r1g3164

2.33

 

universal stress protein

PVE_r1g3188

2.26

 

universal stress protein

PVE_r1g3381

2.43

 

RND transporter MFP subunit

PVE_r1g3768

2.26

 

universal stress protein

PVE_r1g4143

2.30

htpG

chaperone protein HtpG

PVE_r1g4506

2.17

 

nitrate reductase

PVE_r1g4749

2.36

arcA

arginine deiminase

PVE_r1g4750

2.77

arcB

ornithine carbamoyltransferase, catabolic

PVE_r1g4751

2.28

arcC

carbamate kinase

PVE_r1g5119

2.63

dnaK

chaperone protein DnaK

PVE_r1g5393

2.99

cat

catalase

PVE_r1g5544

2.13

soxG

sarcosine oxidase subunit gamma

PVE_r1g5545

1.92

soxA

Sarcosine oxidase subunit alpha

PVE_r1g5546

2.23

soxD

sarcosine oxidase subunit delta

PVE_r1g5547

2.70

soxB

Sarcosine oxidase subunit beta

PVE_r2g0272

2.51

 

Insertion element IS2A uncharacterized 48.2 kDa protein

PVE_r2g0273

2.07

insC1

transposase InsC for insertion element IS2

PVE_r2g0743

2.88

insH5

transposase InsH for insertion sequence element IS5Y

PVE_r2g0813

0.22

merR

mercuric resistance operon regulatory protein

PVE_r2g0814

2.30

merT

mercuric transport protein

PVE_r2g0815

2.24

merP

mercury resistance system

PVE_r2g0816

2.39

merC

putative mercury transport protein MerC

PVE_r2g0817

2.25

merA

mercuric reductase

PVE_r2g0818

2.29

 

conserved hypothetical membrane protein

PVE_r2g0819

2.13

merD

mercuric resistance transcriptional repressor

PVE_r2g0831

3.43

insH5

transposase InsH for insertion sequence element IS5Y

PVE_r2g0931

7.23

tnpA1

putative transposase, TnpA1

PVE_p0038

2.16

 

RND transporter

PVE_p0170

2.00

 

mobile_element

PVE_p0207

2.61

 

integrase

  1. aIn comparison to 1 h in APM