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Table 2 Comparison groups and conditions of genome-wide gene expression analysis

From: Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils

Phase Samplea Material Sampling Time (h)b Comparison groups
Transition LQ-1H Liquid 1  
APM-1H Pure silica 1 APM-1H/LQ-1H
SILT-1H Silt 1 SILT-1H/APM-1H
SAND-1H Sand 1 SAND-1H/APM-1H
CLAY-1H Clay 1 CLAY-1H/APM-1H
JN-1H Jonction 1 JN-1H/APM-1H
JN-1H/soils-1H
Exponential LQ-EXPO Liquid 4 LQ-EXPO/LQ-1H
SILT-EXPO Silt 29 SILT-EXPO/SILT-1H
JN-EXPO Jonction 18 JN-EXPO/JN-1H
Stationary LQ-STAT Liquid 24 LQ-STAT/LQ-1H
APM-STAT Pure silica 70 APM-STAT/APM-1H
SILT-STAT Silt 72 SILT-STAT/SILT-1H
  1. aLQ, liquid suspension; JN, jonction; APM, artificial matrix; 1H, transient 1-h exposure; EXPO, exponential growth phase; STAT, stationary phase
  2. bSampling time corresponds to Fig. 1a and b