Fig. 7

Expression of wild-type P. veronii core metabolic functions in different materials and conditions. a Log₂-mean normalized read numbers of 1234 identified genes of the core metabolic network per 3–4 replicates and condition, clustered to expression levels and grouped according to growth phase (LAG, 1H; EXPO, STAT). b Mean expression levels of metabolic core functions in exponentially growing cells in Jonction (JN) plotted on the appropriate KEGG metabolic map using iPath3, with line width proportional to the log₂ mean read numbers. In blue, those 72 reactions with significantly changed expression levels (i.e., > 2 × SD from the group mean) among JN, liquid (LQ) and Silt-grown cells (Supplementary Table 4)