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Fig. 5 | Environmental Microbiome

Fig. 5

From: Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils

Fig. 5

Genome-wide response of wild-type P. veronii after 1 h contact to Jonction material. a Global gene expression levels (log2 CPKM, counts per kilobasepair per million) versus their log2-fold change (FC), compared between cells in Jonction versus APM; in grey, genes not statistically differentially expressed (log2 FC < 1, False Discovery Rate [FDR] > 0.05, P > 0.01); magenta, genes with lower, and dark purple, genes with higher expression in Jonction. Blue, hypothetical proteins (HP) with log2 FC > 4.00; green, mer genes (mercury detoxification); yellow, sox genes (sarcosine metabolism). Asterisks point to the hmp gene; see main text. b Gene expression differences as per locus position and replicon (description similar to legend of Fig. 3d). c and d Numbers of unique (white zones) and common genes (grey zones) significantly higher (c, UP) or lower (d, DOWN) expressed between Jonction and APM, or soils and APM (at log2 FC > 2, FDR < 0.05, P < 0.01)

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