Table 2 Summary statistics and features of Black Sea 150 and 750 m retrieved MAGs
From: The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics
Phylum/Division | Taxonomic affiliation of MAGs (GTDB, Referenced groups) | n° of MAGs | Range Estimated Genome size (Mp) | Range GC (%) | Range median intergenic spacer (bp) | Av. Compl. (%) | Av. Cont. (%) |
|---|---|---|---|---|---|---|---|
Patescibacteria | c_Microgenomatia (3), c_Paceibacteria, c_ABY1 (4), o_Portnoybacterales (2), o_Shapirobacterales (1), o_Paceibacterales (3), o_Paceibacteria (2) | 15 | 0.6–1.69 | 30–41 | 17–62 | 58.09 | 1.24 |
Omnitrophota | p_Omnitrophota;c_koll11 (13), f_Omnitrophaceae_A (1) | 15 | 0.84–3.78 | 35–47 | 7–84 | 70.45 | 1.69 |
Planctomycetota | c_Brocadiae (1), c_Phycisphaerae (7), o_Pirellulales (2), o_Phycisphaerales (1), f_Pirellulaceae (1), p_Planctomycetota (2) | 14 | 1.92–14.18 | 43–71 | 22–110 | 72.33 | 1.78 |
Desulfobacterota | o_Desulfatiglandales (9), o_Desulfobacterales (4), g_Desulfobacula (1) | 14 | 1.98–8.3 | 40–50 | 53–114 | 65.95 | 1.69 |
Marinisomatota | o_Marinisomatales (5), c_Marinisomatia (2), p_Marinisomatota (6) | 13 | 1.6–4.4 | 34–44 | 10–62 | 81.18 | 1.20 |
Chloroflexota | c_Anaerolineae (3), c_Dehalococcoidia (3), o_Anaerolineales (4), o_Dehalococcoidales (3) | 13 | 1.45–5.78 | 48–63 | 32–89 | 71.59 | 2.14 |
α-Proteobacteria | o_Rhodospirillales_A (6), f_Magnetospiraceae (1), c_Alphaproteobacteria (4) | 11 | 2.59–4.72 | 53–64 | 24–62 | 73.51 | 0.98 |
Nanoarchaeota | o_Woesearchaeales (5), o_Pacearchaeales (1), c_Nanoarchaeia (3) | 9 | 0.8–1.6 | 28–36 | 23–70 | 64.72 | 1.50 |
Bacteroidota | s_Chlorobium_A phaeobacteroides (1), c_Ignavibacteria (1), o_Bacteroidales (5), c_Bacteroidia (1) | 8 | 2.46–5 (3.5) | 33–49 | 40–81 | 85.09 | 2.28 |
ɣ-Proteobacteria | g_Thioglobus_A (2), g_Methylobacter_A (1),g_Acidovorax_D (1), c_Gammaproteobacteria (3) | 7 | 1.18–5.59 | 37–64 | 14–67 | 75.25 | 2.11 |
Crenarchaeota | c_Bathyarchaeia (3), g_Nitrosopumilus (3) | 6 | 1.39–2.92 | 32–58 | 37–85 | 65.18 | 0.88 |
Actinobacteriota | o_Microtrichales;f_MedAcidi-G1 (2), p_Actinobateriota;c_UBA1414 (2) | 4 | 1.42–2.33 | 31–64 | 27–68 | 76.65 | 1.09 |
Verrucomicrobiota | c_Kiritimatiellae (2), o_Kiritimatiellales (2) | 4 | 2–3.6 | 53–60 | 45–56 | 74.04 | 2.53 |
Aenigmarchaeota | c_Aenigmarchaeia (3), o_Aenigmarchaeales (1) | 4 | 0.71–1.29 | 36–45 | 37–59 | 55.9 | 1.86 |
Cloacimonadota | c_Cloacimonadia (2), o_Cloacimonadales (1) | 3 | 1.2–2.91 | 31–36 | 15–50 | 74.34 | 0.11 |
Campylobacterota | f_Arcobacteraceae (1), g_Sulfurimonas (1) | 2 | 1.14–1.81 | 30–35 | 9–15 | 60.01 | 1.04 |
Nitrospirota | c_Thermodesulfovibrionia (2) | 2 | 1.85–3.18 | 44–46 | 53–68 | 68.81 | 0.94 |
KSB1 | p_AABM5–125-24 (1), p_KSB1 (1) | 2 | 4.05–5.13 | 37–46 | 94–144 | 73.31 | 2.2 |
Myxococcota | p_Myxococcota (1) | 1 | 4.46 | 63.7 | 37 | 60.65 | 0.84 |
Bdellovibrionota | f_Bacteriovoracaceae (1) | 1 | 4.78 | 37.2 | 40 | 92.41 | 3.63 |
Spirochaetota | c_Spirochaetia (1) | 1 | 2.92 | 40.9 | 52 | 67.32 | 1.89 |
Halobacterota | d_Archaea;p_Halobacterota;c_Syntrophoarchaeia;o_ANME-1 (1) | 1 | 1.81 | 43.1 | 52 | 55.52 | 0.65 |
Nitrospinota | f_Nitrospinaceae (1) | 1 | 3.08 | 46 | 69 | 93.96 | 2.56 |
Delongbacteria | p_Delongbacteria (1) | 1 | 3.002 | 54 | 45 | 64.03 | 1.1 |
SAR324 | c_SAR324;o_SAR324 (1) | 1 | 2.96 | 41.7 | 53 | 82.86 | 0 |
SM23 | d_Bacteria;p_AABM5–125-24 (1) | 1 | 3.58 | 45.1 | 131 | 73.63 | 3.3 |
Acidobacteriota | f_Aminicenantaceae (1) | 1 | 3.0955127 | 40.5 | 68 | 89.52 | 4.27 |