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Table 1 Taxonomic affiliations and characteristics of selected metagenome-assembled genomes (MAGs) most abundant in HR biofilms

From: Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics

MAG Taxonomic affiliation1 MAG features
Phylum Class Order Family Genus Comleteness2 [%] Contamination2 [%] Size [bp] GC content [%] No. of genes No. of rrn genes No. of tRNA genes
Bacteria
 13 Firmicutes Unknown Unknown Unknown Unknown 29.74 3.43 1,239,774 44.81 1159 3 31
 17* Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Prevotella sp. 68.02 8.98 2,689,597 48.90 2294 2 39
 18* Firmicutes Clostridia Lachnospirales Lachnospiraceae Acetivibrio sp. 68.50 3.65 2,855,089 39.03 2917 n/d3 15
 40* Firmicutes Clostridia Lachnospirales Lachnospiraceae Herbinix sp. 68.42 7.66 1,849,940 36.65 1755 n/d 8
 48 Firmicutes Clostridia Lachnospirales Lachnospiraceae Herbinix sp. 26.48 2.63 770,644 37.4 614 n/d 3
 50 Firmicutes Clostridia Lachnospirales Defluviitaleaceae Unknown 51.74 6.14 1,725,349 31.02 1775 n/d 31
 68 Firmicutes Clostridia Lachnospirales Lachnospiraceae Herbinix sp. 52.17 4.77 2,358,488 46.61 2310 2 27
 84 Firmicutes Clostridia Lachnospirales Unknown Unknown 35.22 5.14 1,970,476 38.81 1672 2 17
 85 Firmicutes Unknown Unknown Unknown Unknown 80.11 3.08 2,011,311 47.98 2076 n/d 33
 106 Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium sp. 33.09 4.39 883,787 31.79 812 n/d 17
 107* Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium sp. 50.06 6.97 1,539,556 29.37 1648 n/d 17
 108* Bacteroidetes Bacteroidia Bacteroidales Unknown Unknown 79.01 8.21 2,032,215 47.60 2025 1 29
 109 Bacteroidetes Bacteroidia Bacteroidales Dysgonomonadaceae Proteiniphilum sp. 63.52 7.19 2196,928 45.07 2196 1 27
 132 Firmicutes Clostridia Unknown Unknown Unknown 26.26 2.37 1,284,977 37.03 1286 n/d 16
 134* Firmicutes Clostridia Lachnospirales Lachnospiraceae Kineothrix sp. 78.46 9.27 2,788,291 40.86 2946 n/d 31
 145 Firmicutes Bacilli Lactobacillales Aerococcaceae Jeotgalibaca sp. 63.37 9.48 2,346,037 46.04 2647 n/d 14
 146 Firmicutes Bacilli Unknown Unknown Unknown 33.22 0.00 861,844 38.49 705 1 13
Archaea
 111 Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium sp. 73.74 8.57 2,134,563 37.98 2406 2 51
  1. 1 GTDB-Tk based classification
  2. 2 For details, refer to [22] and Additional file 4
  3. 3 n/d = not detected
  4. * MAGs which showed increased transcriptional activity in responce to the organic loading rate (OLR)
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Environmental Microbiome

ISSN: 2524-6372