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Table 5 Abundant microbial taxa in pellet and supernatant fractions from subway air samples (MetaSUB method)

From: Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research

Supernatant

Pellet

Phylum

Prevalence

abundance

Phylum

Prevalence

abundance

mean

Total

mean

Total

Actinobacteria

3.5

9479

51.21%

Actinobacteria

4.0

10,653

53.53%

Proteobacteria

3.1

14,453

28.87%

Proteobacteria

3.4

15,894

24.50%

Bacteroidetes

2.8

3139

7.10%

Basidiomycota

3.7

717

5.42%

Firmicutes

2.5

3816

4.23%

Ascomycota

4.2

2109

5.23%

Deinococcus-Thermus

3.2

184

3.06%

Bacteroidetes

2.9

3202

4.44%

Basidiomycota

1.5

290

1.86%

Firmicutes

2.6

3874

2.68%

Ascomycota

2.4

1231

1.62%

Deinococcus-Thermus

3.7

214

2.05%

Cyanobacteria

2.8

431

1.47%

Cyanobacteria

3.6

557

1.03%

Euryarchaeota

1.5

260

0.17%

Euryarchaeota

2.1

367

0.66%

Acidobacteria

3.4

103

0.10%

Acidobacteria

4.4

132

0.11%

Family

Prevalence

abundance

Family

Prevalence

abundance

mean

Total

mean

Total

Micrococcaceae

3.6

735

11.27%

Micrococcaceae

3.9

795

14.70%

Nocardioidaceae

3.1

236

9.32%

Nocardioidaceae

3.0

222

8.26%

Microbacteriaceae

3.4

921

5.24%

Geodermatophilaceae

2.9

97

4.65%

Sphingomonadaceae

3.8

1119

5.20%

Microbacteriaceae

3.5

958

4.53%

Geodermatophilaceae

3.7

121

4.60%

Sphingomonadaceae

4.3

1260

4.22%

Moraxellaceae

2.9

794

4.14%

Intrasporangiaceae

3.8

199

4.20%

Hymenobacteraceae

3.5

150

3.93%

Moraxellaceae

2.6

717

2.77%

Intrasporangiaceae

3.7

192

3.81%

Corynebacteriaceae

4.2

881

2.61%

Corynebacteriaceae

3.7

789

3.77%

Rhodobacteraceae

4.3

1698

2.33%

Deinococcaceae

4.0

117

3.03%

Hymenobacteraceae

3.8

163

2.15%

Genus

Prevalence

abundance

Genus

Prevalence

abundance

mean

Total

mean

Total

Arthrobacter

3.3

320

6.31%

Arthrobacter

3.7

357

7.74%

Sphingomonas

3.7

512

4.40%

Micrococcus

3.9

39

4.19%

Nocardioides

3.0

127

3.87%

Sphingomonas

4.1

560

3.40%

Hymenobacter

3.4

89

3.85%

Nocardioides

2.9

120

3.14%

Corynebacterium

3.8

767

3.73%

Blastococcus

3.5

39

3.13%

Psychrobacter

2.5

143

3.24%

Corynebacterium

4.2

854

2.59%

Deinococcus

4.0

117

3.03%

Marmoricola

5.8

23

2.56%

Friedmanniella

6.0

18

2.85%

Friedmanniella

6.0

18

2.38%

Blastococcus

4.1

45

2.60%

Psychrobacter

2.3

133

2.37%

Micrococcus

4.6

46

2.31%

Hymenobacter

3.2

84

2.04%

Species

Prevalence

abundance

Species

Prevalence

abundance

mean

Total

mean

Total

Deinococcus marmoris

6.0

6

2.07%

Arthrobacter sp. H41

6.0

6

2.07%

Arthrobacter sp. Leaf234

6.0

6

1.91%

Micrococcus luteus

6.0

6

1.96%

Marmoricola sp. Leaf446

6.0

6

1.31%

Rubrobacter aplysinae

6.0

6

1.52%

Friedmanniella flava

6.0

6

1.05%

Arthrobacter sp. Leaf234

6.0

6

1.51%

Friedmanniella sagamiharensis

6.0

6

1.03%

Marmoricola sp. Leaf446

6.0

6

1.42%

Cutibacterium acnes

6.0

6

1.02%

Blastococcus sp. DSM 44268

6.0

6

1.32%

Mrakia frigida

6.0

6

1.02%

Deinococcus marmoris

6.0

6

1.27%

Blastococcus sp. DSM 44268

6.0

6

1.02%

Arthrobacter agilis

6.0

6

0.95%

Micrococcus luteus

6.0

6

1.01%

Friedmanniella flava

6.0

6

0.89%

Arthrobacter sp. H41

6.0

6

0.98%

Stereum hirsutum

6.0

6

0.86%

  1. Top ten microbial phyla, families, genera and species in the intermediate pellet (N = 6) and supernatant (N = 6) fractions from subway air samples (N = 6) processed with the MetaSUB method