Skip to main content

Advertisement

Table 3 Abundant microbial taxa in subway air samples (MetaSUB v. Zymobiomics method)

From: Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research

MetaSUB v. Zymobiomics
MetaSubZymobiomics
PhylumprevalenceabundancePhylumprevalenceAbundance
meantotalmeantotal
Actinobacteria2.7927151.61%Actinobacteria2.7930157.72%
Proteobacteria2.314,26927.02%Proteobacteria2.213,42123.67%
Firmicutes1.632504.76%Ascomycota2.518994.91%
Bacteroidetes2.029994.74%Basidiomycota2.46224.75%
Ascomycota2.418434.42%Firmicutes1.327053.30%
Basidiomycota2.36063.84%Bacteroidetes1.522572.77%
Cyanobacteria2.35261.35%Deinococcus-Thermus2.62041.26%
Deinococcus-Thermus2.51961.23%Cyanobacteria1.94320.66%
Euryarchaeota1.74500.62%Euryarchaeota1.53930.58%
Acidobacteria2.51120.08%Acidobacteria2.61140.08%
FamilyprevalenceabundanceFamilyprevalenceAbundance
meantotalmeantotal
Micrococcaceae2.880115.72%Micrococcaceae2.882220.34%
Nocardioidaceae2.83086.51%Nocardioidaceae2.93116.65%
Microbacteriaceae2.612224.89%Microbacteriaceae2.612354.70%
Sphingomonadaceae2.810063.88%Geodermatophilaceae3.01504.24%
Geodermatophilaceae3.01503.67%Sphingomonadaceae2.810134.04%
Moraxellaceae1.96083.54%Intrasporangiaceae3.02113.46%
Intrasporangiaceae3.02113.15%Corynebacteriaceae2.65713.35%
Comamonadaceae2.68002.94%Comamonadaceae2.78383.02%
Corynebacteriaceae2.65682.93%Rhodobacteraceae2.614842.28%
Staphylococcaceae2.34012.17%Moraxellaceae1.65332.14%
GenusprevalenceabundanceGenusprevalenceAbundance
meantotalmeantotal
Micrococcus2.9297.27%Micrococcus2.9299.34%
Arthrobacter2.83995.32%Arthrobacter2.94136.44%
Nocardioides2.81763.51%Nocardioides2.91773.57%
Sphingomonas2.94613.09%Kocuria2.7793.44%
Corynebacterium2.65682.93%Corynebacterium2.65713.35%
Psychrobacter2.01412.85%Sphingomonas2.94643.23%
Blastococcus3.0602.44%Blastococcus3.0602.92%
Staphylococcus2.23082.02%Psychrobacter2.71841.82%
Kocuria2.7792.02%Dietzia3.0511.70%
Hymenobacter2.9981.92%Paracoccus2.91671.58%
SpeciesprevalenceabundanceSpeciesprevalenceAbundance
meantotalmeantotal
Micrococcus luteus3.031.13%Micrococcus luteus3.031.44%
Arthrobacter sp. H413.031.00%Arthrobacter sp. H413.031.38%
Rubrobacter aplysinae3.030.78%Rubrobacter aplysinae3.030.97%
Arthrobacter sp. Leaf2343.030.67%Arthrobacter sp. Leaf2343.030.89%
Marmoricola sp. Leaf4463.030.65%Stereum hirsutum3.030.76%
Chlorogloea sp. CCALA 6953.030.63%Marmoricola sp. Leaf4463.030.76%
Deinococcus marmoris3.030.60%Fomitopsis pinicola3.030.68%
Stereum hirsutum3.030.50%Blastococcus sp. DSM 442683.030.64%
Blastococcus sp. DSM 442683.030.48%Deinococcus marmoris3.030.57%
Fomitopsis pinicola3.030.45%Lecanicillium sp. LEC013.030.57%
  1. Top ten microbial phyla, families, genera and species in subway air samples (N = 3) that were split and processed with the MetaSUB (N = 3) and Zymobiomics (N = 3) methods