Table 1 Terrestrial Nitrosospira AOB strains used in this study with related amoA and 16S rRNA gene phylogenetic affiliations (based on the phylogenetic trees presented in Fig. 1)
Organism | amoA gene lineage | 16S rRNA gene lineage |
|---|---|---|
Nitrosospira multiformis Nsp16 | D1 | S3a |
Nitrosospira sp. Nsp18 | D1 | S3a |
Nitrosospira sp. 1 Nsp11 | D1 | S3a |
Nitrosospira briensis C-128 | D2 | S3b |
Nitrosospira sp. Nsp1 | D2 | S3b |
Nitrosospira sp. NRS527 | D2 | S3b |
Nitrosospira sp. Nsp40 | D3 | S3b |
Nitrosospira sp. Nsp22 | D4 | S3b |
Nitrosospira tenuis Nv12 | D5 | S3c |
Nitrosospira sp. Nv6 | D5 | S3c |
Nitrosospira sp. Nsp37 | D5 | S3c |
Nitrosospira sp. Nv4 | D5 | S3c |
Nitrosospira sp. Nsp62 | D6 | S3d |
Nitrosospira briensis Nsp10 | D7 | S3e |
Nitrosospira briensis Nsp8 | D7 | S3e |
Nitrosospira sp. Nsp14 | D8 | S3f |
Nitrosospira sp. Nsp17 | D8 | S3f |
Nitrosospira sp. Nsp2 | D8 | S3 g |
Nitrosospira sp. Nsp44 | D8 | S3 h |
Nitrosospira multiformis 24C | D9 | S3i |
Nitrosospira sp. L115 | D9 | S3i |
Nitrosospira sp. A16 | D9 | S3i |
Nitrosospira sp. AF | D9 | S3i |
Nitrosospira tenuis Nv1 | D10 | S3i |
Nitrosospira multiformis ATCC 25196 | D11 | S3k |
Nitrosospira multiformis Nl13 | D11 | S3k |
Nitrosospira multiformis Nl4 | D11 | S3k |
Nitrosospira multiformis Nl18 | D11 | S3k |
Nitrosospira multiformis Nl15 | D11 | S3k |
Nitrosospira multiformis Nl14 | D11 | S3k |
Nitrosospira multiformis Nl7 | D11 | S3k |
Nitrosospira multiformis Nl8 | D11 | S3k |
Nitrosospira multiformis Nl12 | D11 | S3 l |
Nitrosospira multiformis Nl2 | D11 | S3 m |
Nitrosospira multiformis Nl3 | D11 | S3n |
Nitrosospira sp. Nsp65 | D12 | S65 |
Nitrosospira sp. 56–18 | D12 | S65 |
Nitrosospira sp. Nsp5 | D13 | S0 |
Nitrosospira multiformis Nl1 | D13 | S0 |
Nitrosospira sp. Nsp13 | D13 | S0 |
Nitrosospira sp. Nsp6 | D13 | S0 |
Nitrosospira sp. Nsp12 | D13 | S0 |
Nitrosospira sp. 40KI | D13 | S0 |
Nitrosospira sp. NpAV | D14 | S0 |
Nitrosospira lacus APG3 | D16 | S0 |
Nitrosospira sp. Ka4 | D16 | S4 |
Nitrosospira sp. Ka3 | D16 | S4 |
Nitrosospira sp. Nsp41 | D16 | S3p |
Nitrosospira sp. Nsp58 | D16 | S57 |
Nitrosospira sp. B6 | D16 | S2 |
Nitrosospira sp. III7 | D15 | S2 |
Nitrosospira sp. O13 | D15 | S2 |
Nitrosospira sp. O4 | D15 | S2 |
Nitrosospira sp. AHB1 | D15 | S2 |
Nitrosospira sp. Nsp57 | D17 | S57 |
Nitrosospira sp. Nl5 | D17 | S57 |