Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Table 7 Summary of inverted repeat, palindrome, and direct repeat present in C. sakazakii strains MOD1_Jor151 and MOD1_Jor173 genomes^a

Type of repeats	Strain	Gene	Sequence
IR^b	MOD1_Jor151 (108,510-108,524)c	xylB	GCCTTTCGCCAGCGG…
	MOD1_Jor151 (117,747-117,761)	amy1	…CCGCTGGCGAAAGGC
	MOD1_Jor151 (120,139-120,154)	avtA	GACAAATGGCAGCCAG…
	MOD1_Jor151 (122,314-122,329)	xylS	…CTGGCTGCCATTTGTC
	MOD1_Jor151 (119,330-119,345)	amy1	GCTGTTTCGCGAAGGC…
	MOD1_Jor151 (122,381-122,396)	xylS	…GCCTTCGCGAAACAGC
P	MOD1_Jor151 (116,843-116,858)	bax	CATGGTCG CGACCATG…
P	MOD1_Jor151 (116,843-116,858)	bax	…CATGGTCG CGACCATG
DR	MOD1_Jor151 (113,704-113,719)	xylG	TCACCAGCTGGTGCAG…
	MOD1_Jor151 (123,862-123,877)	xynT	TCACCAGCTGGTGCAG…
	MOD1_Jor151 (116,936-116,950)	bax	GTAACGCTTCGCGAT…
	MOD1_Jor151 (123,587-123,601)	xynT	GTAACGCTTCGCGAT…
	MOD_Jor173 (74,114-74,128)	xylR	TGTGCTGGTGCCGCC…
	MOD_Jor173 (81,051-81,065)	xylS	TGTGCTGGTGCCGCC…

^aGenome assemblies were analyzed using the sequence repeat finder algorithm within Geneious. These two examples represent the various sequence repeat permutations found among the 26 spice-associated strains. For specific locations of the sequence repeats for each stain please refer to Additional file 5: Table S5
^bAbbreviations: IR Inverted repeat, P Palindrome, DR Direct repeat
^cNumbers within the parenthesis refer to the start and end base position of sequence repeats within Geneous

ISSN: 2524-6372