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Table 7 Summary of inverted repeat, palindrome, and direct repeat present in C. sakazakii strains MOD1_Jor151 and MOD1_Jor173 genomesa

From: Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Type of repeats Strain Gene Sequence
IRb MOD1_Jor151 (108,510-108,524)c xylB GCCTTTCGCCAGCGG…
MOD1_Jor151 (117,747-117,761) amy1 …CCGCTGGCGAAAGGC
MOD1_Jor151 (120,139-120,154) avtA GACAAATGGCAGCCAG…
MOD1_Jor151 (122,314-122,329) xylS …CTGGCTGCCATTTGTC
MOD1_Jor151 (119,330-119,345) amy1 GCTGTTTCGCGAAGGC…
MOD1_Jor151 (122,381-122,396) xylS …GCCTTCGCGAAACAGC
P MOD1_Jor151 (116,843-116,858) bax CATGGTCG CGACCATG…
MOD1_Jor151 (116,843-116,858) bax …CATGGTCG CGACCATG
DR MOD1_Jor151 (113,704-113,719) xylG TCACCAGCTGGTGCAG…
MOD1_Jor151 (123,862-123,877) xynT TCACCAGCTGGTGCAG…
MOD1_Jor151 (116,936-116,950) bax GTAACGCTTCGCGAT…
MOD1_Jor151 (123,587-123,601) xynT GTAACGCTTCGCGAT…
MOD_Jor173 (74,114-74,128) xylR TGTGCTGGTGCCGCC…
MOD_Jor173 (81,051-81,065) xylS TGTGCTGGTGCCGCC…
  1. aGenome assemblies were analyzed using the sequence repeat finder algorithm within Geneious. These two examples represent the various sequence repeat permutations found among the 26 spice-associated strains. For specific locations of the sequence repeats for each stain please refer to Additional file 5: Table S5
  2. bAbbreviations: IR Inverted repeat, P Palindrome, DR Direct repeat
  3. cNumbers within the parenthesis refer to the start and end base position of sequence repeats within Geneous