Table 5 Summary of the average number of genes and percentage of each genome representing each COG functional category associated with the 26 C. sakazakii strains evaluated in this studya
Code | Value | %age | Description |
|---|---|---|---|
J | 177 | 4.5 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 304 | 7.8 | Transcription |
L | 168 | 4.3 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 46 | 1.2 | Cell cycle control, Cell division, chromosome partitioning |
V | 54 | 1.4 | Defense mechanisms |
T | 149 | 3.8 | Signal transduction mechanisms |
M | 245 | 6.3 | Cell wall/membrane biogenesis |
N | 75 | 1.9 | Cell motility |
U | 64 | 1.6 | Intracellular trafficking and secretion |
O | 146 | 3.8 | Posttranslational modification, protein turnover, chaperones |
C | 206 | 5.3 | Energy production and conversion |
G | 323 | 8.3 | Carbohydrate transport and metabolism |
E | 281 | 7.2 | Amino acid transport and metabolism |
F | 102 | 2.6 | Nucleotide transport and metabolism |
H | 148 | 3.8 | Coenzyme transport and metabolism |
I | 84 | 2.1 | Lipid transport and metabolism |
P | 235 | 6.0 | Inorganic ion transport and metabolism |
Q | 46 | 1.2 | Secondary metabolites biosynthesis, transport and catabolism |
R | 0 | 0.0 | General function prediction only |
S | 894 | 22.9 | Function unknown |
– | 154 | 4.0 | Not in COGs |