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Table 4 Summary of the genome statistics of the 26 C. sakazakii strains evaluated in this studya

From: Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

Attribute Value Range % of Total
Genome size (kb) 4393 4052-4716 100.0
DNA coding (kb) 3898 3779-4160 88.3
Number of DNA G + C bases (kb) 2510 2438-2664 56.9
DNA scaffolds 46.2 23–100 100.0
Total genes 4207 4090-4541 100.0
Protein coding genes 4055 3937-4383 96.4
RNA genes 151.6 142–162 3.6
Pseudo genesd 100.6 73–157 - c
Genes in internal clusters 887.1 829–962 21.0
Genes assigned to COGs 3,151b 3101-3251 74.9
Genes with Pfam domain 3877 3595-3879 87.4
Genes with signal peptides 413.5 403–436 9.8
Genes with transmembrane proteins 994.6 978–1038 23.7
CRISPR repeatsd 2.6 2–4 -c
  1. aData was obtained from the JGI IMG pipeline. Note: Genome statistics for each individual strain is shown in Additional file 1: Table S1
  2. bThe number of genes assigned to COGs by NCBI was 3902 compared to the value (3151 genes) assigned by the JGI IMG pipeline
  3. cNCBI pipeline did not have the % total for the CRISPR repeats and pseudo genes
  4. dData was obtained from the NCBI, https://www.ncbi.nlm.nih.gov/nuccore